Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372826
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Entry
139372826 CDS
T10872
Name
(RefSeq) cullin-4A-like
KO
K10609
cullin 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420
Nucleotide excision repair
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139372826
09124 Replication and repair
03420 Nucleotide excision repair
139372826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139372826
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139372826
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139372826
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
139372826
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
139372826
TCR (transcription coupled repair) factors
Cul4-CSA complex
139372826
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139372826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
139372826
NCBI-ProteinID:
XP_070968746
LinkDB
All DBs
Position
18:complement(4295982..4318853)
Genome browser
AA seq
757 aa
AA seq
DB search
MAEDIRQDKKANFSALTEHNNNGVTKISGLASNKTGASKKLVIKNFKDRPKLADNYTEDT
WLKLRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPTLYKQLRQVCEDHVQAQIHQFR
EESLDSLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRNHI
VSDGAVQKRTVDGILEQIERERNGETVDRSLLRSLLGMLSDLQVYKESFEERFLMETDRL
YAAEGQRLMQERDVPEYLHHVARRLEEENDRVISYLDQSTQKPLISNVEKQLLGEHMTAI
LQKGLSILLDGNRVMELALLYQLFSKVKGGLPTLLQHWRDYIKSFGGEIVGTPEKDKDMV
QDLLDFKDKMDNVAQGCFNRNESFINAMKEAFEAFINNRPNKPAELIAKYVDCKLRAGNK
EATEEEMERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE
CGAAFTSKLEGMFKDMELSKDVMIQFKQYTQNQSEPSQLELTVNILTMGYWPSYTPMEVH
LPPEMVKLQEVFKLFYLGKHSGRKLQWQPTLGHAVLKTEFKEGKKELQVSLFQTLVLLMF
NEGEEFSVEEIKSATGIEEGELRRTLQSLACGKARVLNKSPRGKDIEDGDRFNFNNDFRH
KLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLGHNLLVSELYNQ
LKFPVKPGDLKKRIESLIDRDYMERDKESPNQYHYVA
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacatacgacaggacaagaaagccaacttctctgctctgacggagcacaac
aacaacggagtgacaaagatttctggcctggcctccaacaaaactggcgcctccaagaaa
ttagtcattaaaaatttcaaagacaggccaaagctagcggacaactacactgaggacacc
tggctgaagctgagggatgcagtaggagccatccagaacagcacctccatcaagtacaac
ctagaggaactctaccaggcggtggagaacctgtgttcctataaagtctcccccacactg
tacaagcagctccgtcaggtctgtgaggaccatgtccaggcccagatacatcagttcaga
gaagagtccctggacagcctgtctttcctgaagaggatgaaccgatgttggcaggaccac
tgcagacagacgatcatgatccggagtatctttctgttcctggatcgtacctacgtgctc
cagaactccctgctcccctccatctgggataccgggctggaactcttccggaaccacatc
gtgagcgacggggctgtccagaagcgcacggtcgacgggatcctggaacagatcgaacgc
gaacgcaacggagagacggtggaccgcagccttctccgcagcctactgggcatgctctca
gacctgcaggtgtacaaagagtcgtttgaggagcgttttttgatggagactgacagactg
tacgctgcagagggacagaggctgatgcaggaacgagacgtgccggagtacctgcatcat
gtggctcgtcggttggaagaagagaacgatcgtgtcatcagctacctcgaccagagcact
cagaagccacttatctctaatgtagagaagcagctgcttggagaacacatgacggccatc
ttacagaaaggtctcagtattctgttagacggtaaccgggtgatggagctggctctgctc
taccagctcttcagtaaggtgaagggaggactccccactctgctgcaacactggagagac
tacatcaagagttttggtggtgagattgtgggcaccccagagaaggataaggacatggtt
caagacctgttggactttaaggataagatggacaacgtggcccagggctgtttcaacaga
aacgagagcttcatcaacgctatgaaggaggcctttgaagctttcatcaacaacagaccc
aacaaacctgctgaactcatcgcgaagtacgtggactgtaaattgagggcgggcaacaag
gaagctaccgaggaggagatggagagaattctagacaagatcatgatcatcttccgcttc
atccacgggaaggatgtgttcgaggccttttataagaaggacctggccaaacggctgctg
gtggggaagagtgcctccgtggacgctgagaagtccatgctgtccaaactcaaacacgag
tgtggagcggccttcaccagtaagctggaggggatgtttaaggacatggagctctccaaa
gacgttatgatccagttcaagcagtacacccagaaccagagtgagcccagccagctggag
ctgacggtcaacatcctcaccatgggctactggccctcctacactcctatggaggtccac
ctgccccctgagatggtgaagctccaggaggtattcaagctgttctatctggggaaacac
agtggcaggaagctccagtggcagcccaccctgggccacgctgttctgaagactgagttt
aaagagggtaagaaggagctgcaggtgtctctgttccagacgttggtgctattgatgttc
aacgagggggaggagttcagtgtggaggagatcaaatcagccactggcatagaggagggt
gagttgaggcgtaccctgcagtctctggcctgtgggaaggcgcgcgtcctcaataagagt
ccccgggggaaggacatagaagacggagaccgcttcaacttcaacaacgacttcagacac
aaactgttccgcatcaagatcaaccagattcagatgaaggaaacggtagaggagcaggtg
agcaccacagagcgtgtgtttcaggacagacagtaccagatcgacgcggccgttgtccgc
atcatgaagatgaggaaaaccctgggccacaacctgttggtgtcagaactatacaaccag
ctcaagttccccgtcaagcctggagacctgaagaagcggattgagtcgctgattgacaga
gactacatggagagagacaaggagagtcccaaccagtaccactatgtggcctga
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integrated database retrieval system
