Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373058
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Entry
139373058 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139373058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139373058
03041 Spliceosome [BR:
ocla03041
]
139373058
03036 Chromosome and associated proteins [BR:
ocla03036
]
139373058
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139373058
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139373058
mRNA cycle factors
Common to processing body (P body) and stress granule
139373058
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139373058
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
139373058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
139373058
NCBI-ProteinID:
XP_070969192
LinkDB
All DBs
Position
18:complement(15071995..15087666)
Genome browser
AA seq
744 aa
AA seq
DB search
MSHVAVENLHGLEQQLAVLGLNNADGQGGGTGRTCYIPPHLRNQEASKNADAFSRPSALS
MAPGSYMPGGWDGGRSNGFVQNGYHDNRMNGGNRYNSGPPRMERGRGGGGFRGGRGGSYN
PVQPMQNVGMFGVYDNKDGGGWNTTKDTYTSFGARPDRGKSAFFNNGGSAPRGSYQRGGF
GGSGNSRWVEESRDDEDWSKPTQANERLEQELFAGGNTGINFDNYDDIPVEATGQNCPHH
IDSFQDVEMGEIIMSNIALTRYTRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAFLLPV
LSQIYTEGPGEALAAQKSGGQDNGKYGRRKQYPLALVLAPTRELALQIYEEARKFAYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEDGDKRSFLLDLLNATVIPSEVQDNAGENIEKPGKNSLTLVFVETKKGADAL
EDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFD
LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYE
HQHKSNTRGRSKRFTSGGFGARDYRQTSGGGSTGGFGGRGGRQPSGHGGNRGFGGGGGFG
GNFYSSDGYGGNYSHQGGVDWWGN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatttacacggtctagaacagcagcttgctgtcctaggc
ttgaacaatgctgacgggcagggcggaggcactggcaggacctgttacattccacctcat
ttacggaaccaagaggcttccaaaaatgcagatgctttctctagaccgagcgctttgtca
atggcaccaggaagctatatgcctggcggttgggacggcggacgcagcaacggcttcgtg
cagaacggttaccacgacaaccgcatgaatgggggcaaccggtacaacagtggcccgcct
cgcatggagaggggcagggggggtggaggtttccgtggtggtaggggcgggtcctacaac
ccggtacagcctatgcagaatgtcggcatgtttggagtctacgacaacaaagatggcggc
ggctggaacacgactaaagatacctacaccagcttcggcgcgcgtcctgatagggggaag
tctgcttttttcaacaatggcgggagtgcacccagaggaagttaccagcgtggagggttt
ggaggcagtggaaacagccgctgggtggaggagtccagggatgacgaggactggtccaaa
cccactcaggccaatgagcgcctggaacaggagctgttcgctggtggcaacacagggatt
aactttgacaattacgatgacattcctgttgaggccactggccaaaactgcccccatcac
attgacagcttccaagacgtagagatgggagagatcataatgagtaacatcgccctgacc
cgctacactcggcccactccggtccagaagtacgccattccaatcatcaagaacaagagg
gacctgatggcctgcgcccagacaggttccggtaagactgctgcgttccttttgcctgta
ctgagtcagatctacactgaaggcccaggagaagccctcgctgcccagaagtctggggga
caggacaacggaaagtatggtcgccgtaagcagtaccccctcgctctggtcctggccccc
accagagaactggccctgcagatctatgaagaggccagaaagtttgcataccggtcccgt
gtgcgtccttgtgtggtgtacggaggggctgacattggccagcagatcagagacctggag
cgaggctgtcacctactggtggctacacctggacgcctggtggacatgatggagaggggc
aagatcggcctcgactactgcaattacctggtgctggatgaggctgaccggatgttggac
atgggttttgagccccagatcagacgcatcgtggagcaggacaccatgccccctaaaggc
atccgtcagaccatgatgttcagcgctaccttccccaaggagatccagatcctggcgcgt
gacttcctggaggagtacatcttcctggcggtgggacgtgtgggctccacctccgagaac
atcacccagaaggtggtgtgggtggaggacggtgataagagatccttcctcctggacttg
ctcaatgctacagtcattccgagtgaagttcaggacaatgcaggtgaaaacatagagaaa
cctggtaagaactctctgacgctggtgtttgtggaaaccaagaagggagcggatgccctg
gaggacttcctgtaccgtgagggttatgcctgcaccagtatccatggcgaccgctcccag
agggaccgagaggaggctctgcaccagttccgctcgggacgctgccccatcctggttgcc
acagcggtggctgcccgtggcctggacatctccaatgtcaagcacgttatcaactttgac
ctgcccagcgatatagaggagtacgtccaccgtattggccgtactggacgtgtaggcaat
ctgggtctggccacatcgttcttcaacgataagaacggcaacatcaccaaggaccttctg
gacatcctagtggaggccaaacaggaagtaccctcctggctggagagcctggcctatgaa
caccagcacaagagcaacacccgcggacgctccaagaggttcacctctggtggcttcgga
gccagggactaccgtcagaccagtggtggcggcagcactggagggttcgggggtcgtggt
ggacgccagcccagtgggcatggaggaaaccgtggatttggtggcggcggtggctttgga
ggcaacttctacagcagtgacggctatggaggaaactactctcatcaggggggagtggac
tggtggggcaactaa
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