Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373149
Help
Entry
139373149 CDS
T10872
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139373149
Pattern recognition receptors [BR:
ocla04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
139373149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
TIR
TIR_2
LRR_5
LRR_9
LRR_1
LRR_LRWD1
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
139373149
NCBI-ProteinID:
XP_070969396
LinkDB
All DBs
Position
18:18618522..18623297
Genome browser
AA seq
969 aa
AA seq
DB search
MTLKITMPGERSGSTFSQLRLCLCFLMYCWVLADPVCGYFLKNCTIRGNLSDNFNMKVLC
YNRNIEVMPINIPCKVSVLDVAMNNISKIRRLDFKGLSNLKILNMSRNQISQVDNDALLP
LKALRELNLAHNRLTTLSDHLFQGLANLSLLHLDNNLIATISSSSFQPLSSLKTVNLTKN
NLHNMKEVQPIVQLPHLQELYIGSNRFTSFQSQEISNMSIELRLLDLSRNPLGVFRITTD
VLPYLEVLDIAYCGQLGHMEWDVLDRSFLRNVKSLNLSGIEMSLERMAMVLQTVNSSLVH
LRLYDISEERVKALIDFACNIPTLSLLRLHHNNISALSEEFLQSCKQVTEVDLENNNIIQ
LSEVSFRSMEQLSTLRLGHNRLSSVPDASRNISTLMLLDLSFNIIHKLGCSDFSNLTGLT
QLFLFHNQISNLPGCVFQDLKDLRILKLGSNKILALNDDFMSGLHKLEFLSMSYNKLSSI
SKGDFKGLASLKTLLLFDNQIASLEDGAFEGLVNLTELRLQSNKITQIDIRNTVLTGLPH
LRTLDISCNYITYVNDDKLDPPPLSHLTSLENLLIFSQRHKGLCHLPINFLEGLTSLLSF
QAGSLNIKDLHPDTFIHTPQLWFLDMSKNEFTALTPKLFHPTPSLNRLYLPKARLQSLDF
LKGANLSRVTFLQVRKNDITTVNETVLQSLPALTYLDMQDNPFTCGCSDAWFVQWMESNN
QTQVVGAGEFTCNYPADLKDTKLLDVELQFCTVDLGLYYYISTTCLVLLTLIASFAYHFL
KWEVIYGYYLFLAFLYDTKQRNKHKPHGCQYDAFISYNAHDEPWVLRELLPELEGEQGWK
LCLHHRDFQPGKPIIDNIMDGIYGSRKTICVISHRYLESEWCSREIQVASFRLFDEQKDV
LILVFLEEIPTHQLSPYHRMRKLVKKRTYLSWPRVGEHTAVFWQQLRLALETKDGPAEEN
PILSGVQAL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacactcaagataaccatgccaggagaacgaagtgggtctacattctctcagctgaga
ctctgtctttgtttcctgatgtattgctgggttcttgctgatccagtatgtgggtacttc
ctgaaaaactgcacaatccggggtaatctcagtgacaactttaacatgaaagtactctgt
tataacaggaatattgaagtcatgcctataaatattccttgtaaagtaagtgttttagat
gtggccatgaataatatttccaaaatcagaaggttggattttaaaggactgtcaaacctc
aaaattctaaacatgtccagaaaccagatctctcaagtggacaatgacgctcttttaccc
ctaaaggcgcttcgagagttgaatctggctcataacagactcacaaccctgtcagaccat
ttgtttcagggcctagccaacctctccctgctacatctggacaacaacctcattgcaacc
atcagctcctcatcatttcagcctctctccagtttgaagacagtgaatttaaccaagaac
aaccttcataatatgaaggaagttcagcccatcgtacaattaccacacttacaggagttg
tacattgggagcaacaggttcacctctttccaatcacaagaaatatcaaacatgtctata
gagctgaggctgttggatttatcccggaatccattgggagtcttcaggatcacgacagat
gttcttccttaccttgaggtgttagacatcgcctactgtggccaacttggacacatggaa
tgggatgtcctggacaggtcttttctgagaaacgtcaaaagtctcaacctgagcgggatt
gagatgtctttggagaggatggctatggtgctgcagacagtcaactcctcattagtccat
ctgagactgtatgacattagtgaagagagggtcaaggctctcattgattttgcctgcaat
atacccacacttagcttgctccgactgcatcataacaacataagtgctttgtctgaggaa
tttctgcagtcatgtaaacaagtcaccgaagtggacttagaaaataataatattattcag
ctgtcagaggtatcattcagatcaatggagcaactaagtaccttgagactgggccacaac
aggctttcttccgtaccagatgcctcaagaaatatatccacactaatgctcctggatctc
agcttcaatatcatccataaactgggctgctcagatttctccaatcttacaggactcaca
caactctttcttttccacaatcaaatctccaacctaccaggatgtgtattccaggatttg
aaagacttaaggatccttaaactgggatcaaacaaaatcctggccttgaatgatgacttc
atgagtggtttgcacaaactagaatttttgtcgatgtcatacaataagctgagctcaatc
tctaaaggagactttaaaggcttagcatcactcaagaccctgcttttatttgacaatcag
attgctagtcttgaagatggagcctttgagggattggtgaatcttacagaacttagactc
cagtcaaataagatcactcaaatagacataagaaatactgtgctcacgggacttccacac
ttaagaactcttgatatatcctgtaattacatcacatatgtaaatgatgataaattagac
cctccacccctctctcatctgacatctctggagaaccttttgatatttagtcagcgtcac
aagggactgtgtcatctaccaatcaactttcttgaaggtctgacatctttattgtcattc
caggcagggagtcttaacattaaggacctgcacccagacacattcattcacacaccccag
ttgtggttccttgatatgagtaagaatgagttcacagccctcactccaaagctgtttcac
ccaaccccaagtctcaacagactttatctgcccaaagcccgacttcagtccttagatttc
ctcaaaggagcaaacctcagtagagtcactttcttgcaggtgagaaagaatgacataaca
acagtcaatgagacagtgttgcaatctctccctgccttgacatacctggacatgcaagat
aatcctttcacctgtggctgcagcgatgcttggtttgtccagtggatggagagcaacaac
caaacacaagttgttggtgcaggagaatttacctgcaactatcctgccgatctaaaggac
accaagttgttggatgttgagcttcagttctgtacagtggacttaggactttactactac
atctctaccacttgtctggtcctcctcaccctgatagcatcctttgcctaccacttcctg
aaatgggaggtcatttacggctattacctcttcctggctttcctctatgacaccaagcaa
aggaataagcacaagcctcatggctgtcagtacgatgccttcatttcctacaacgcccac
gatgagccctgggtcctgagggagcttctgccagagctggagggagaacagggttggaag
ctgtgtctccaccaccgggacttccagccaggcaaaccaatcatagacaacattatggac
ggcatctacggaagccgcaagaccatctgtgtcatcagccaccgctacctggagagtgag
tggtgctcccgggagatccaggtggccagcttccggctctttgatgagcagaaggacgtc
ctgattctggtgttcctggaggagatccctacccaccagctgtcaccctaccaccggatg
aggaagctagtgaagaaacgcacatacctgagctggcccagagttggggagcacaccgcg
gtcttctggcagcaactacggctggctttagagaccaaggacggccctgctgaagaaaat
cccatcctctctggggtgcaggctctgtga
DBGET
integrated database retrieval system