Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373207
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Entry
139373207 CDS
T10872
Name
(RefSeq) integrin beta-6-like isoform X1
KO
K06589
integrin beta 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139373207
04518 Integrin signaling
139373207
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139373207
09142 Cell motility
04820 Cytoskeleton in muscle cells
139373207
04810 Regulation of actin cytoskeleton
139373207
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139373207
04515 Cell adhesion molecules [BR:
ocla04515
]
139373207
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
139373207
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139373207
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
I-EGF_1
PSI_integrin
EGF_integrin
EGF_2
EGF_Teneurin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
139373207
NCBI-ProteinID:
XP_070969517
LinkDB
All DBs
Position
18:complement(22621813..22640356)
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AA seq
786 aa
AA seq
DB search
MGTAVLLLLILRHWINNVEGTCSVGSAVNCDECLQLGPHCAWCTQENFTDSFLISERCDT
PYLLQERGCPQDQVEFPVTTSEVLRDQPLGKKTGNTNSTEISPQKMALKLRTGSEVTFQV
SVQQTEDYPVDIYYLMDLSASMIDDLEMIKDLGSTLSKEMAKLTSKFRLGFGSFVEKPVL
PFIKITPGELENPCRSVDESCLPTFGYKHVLPLTSSTEKFNNIITNQHVSANIDLPECGF
DAIMQAAVCGDKIGWRNDSMRLLVFVSDADSHFGMDSKMSGIVVPNDGECHLDSNNEYSM
AAHLEYPTLGQLMDKLVDNNILLIFAVTENQKYNYENYASFIPGATVGVLESDSRNILEL
IVTAYKELRSEIELEVLGDTEDLQISFTAICQDGTVLPGQKRCSNVKAGDTVSFNVTVEL
SECLDGPQRFLIKPVGFQDPLEIDLESLCSCVCQQTPEPNSSYCSLGRGSLECGSCLCDP
GYMGSKCECTEESVQSSNCKASGASESCSGQGECYCGQCVCHPSSFGRVYGAYCECDDFS
CGRFRGLLCGGHGDCDCGECVCHSGWTGEYCNCSSSRDTCVSEDGVLCSGRGKCVCGKCV
CSMLGASGDTCEKCPTCGDSCSSARTCVECHLQAEDEATEECVQRCSVPHVFVNNSTEYD
ESQSTLCTLKSENNCFISFSVVAGDAGSTVYNLKMYDCPEPPNIAMIVLGVSLSILTIGL
ILLGVWKLLISVHDRNEVAKFEAERAKARWQSGTNPLFRSSTSTFKNVTYKSAGGPKVDI
HSMDGY
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggggactgctgtacttctactcctgattcttcggcattggatcaacaacgtggaggga
acatgttctgttggcagtgcagtgaattgtgacgagtgtctccagcttggtccccactgt
gcatggtgcacacaagagaatttcaccgactcgtttttaatcagtgagcgatgtgacacg
ccgtacctcctccaagagagaggctgtccccaggaccaggtggaattcccagtgaccact
tccgaggtcctccgggaccagccactcgggaagaagacaggaaataccaacagcacagag
atatcaccacagaagatggccctcaaactccgaactggcagtgaggtgaccttccaggtc
agtgtgcagcagacagaggactaccctgtagacatctactacctgatggacctctcagcc
tccatgattgacgacctggagatgattaaagacttgggctccaccctgtccaaggagatg
gcaaagctcaccagtaaattcagacttggatttgggtccttcgttgagaaaccagtcctc
ccgttcattaagatcactcctggagagctggagaacccttgtaggagtgtggatgagagc
tgtctgccaacgtttggatacaaacacgtcctacccctcaccagcagcacagagaagttc
aacaatatcatcaccaaccagcatgtgtctgccaacatcgacctgccggagtgtggcttc
gatgccattatgcaggcagctgtctgtggggacaagataggctggaggaacgactccatg
cgtctgctggtgtttgtgagcgacgccgactctcactttgggatggacagcaagatgtca
ggcatcgtcgtccctaacgatggggagtgccatctggacagcaacaatgaatactctatg
gctgcccatctggaatacccaactctgggacagctgatggataaactggtggacaataat
atcctgcttatattcgctgtgacggaaaatcagaaatacaactacgagaactatgcaagt
ttcatacctggcgccacggtgggggttctggagtcagattcaaggaacatcctggaactg
attgtgacggcgtataaagagctgcggtctgagatagagctggaggtgctaggagacacg
gaggatctacagatctccttcacggcgatctgtcaggatgggacggtactacctggacag
aaacgatgctccaacgtcaaagctggagacacggtctccttcaacgtgactgtagaactc
tctgagtgtctcgacggtccccagcgtttcctcatcaaaccggtgggctttcaggacccc
ctggagatagacctggagtccctgtgctcctgtgtctgtcagcagacccccgagcccaac
agcagctactgcagcctgggccggggatctctggagtgtggctcctgcctgtgtgatccc
gggtacatgggctccaagtgtgagtgtacggaggagagcgtccagagcagtaactgcaag
gccagtggcgcttcggagtcctgtagcgggcaaggggagtgttactgcggccagtgtgtg
tgtcacccgtctagtttcggacgcgtctacggggcctactgcgagtgtgacgacttctcg
tgtgggaggttccgagggttactctgtggaggtcacggggactgtgactgcggcgagtgt
gtgtgtcatagcggctggacgggggagtactgtaactgcagcagcagcagggacacgtgt
gtgtcggaggacggagtgctgtgcagcggacgggggaagtgtgtgtgtgggaagtgtgtg
tgttccatgctcggagcctctggagacacctgtgaaaagtgccctacctgtggagactcc
tgtagctctgctagaacctgtgtggagtgtcatctacaagcagaagacgaggccacagag
gagtgtgtccaaaggtgcagcgtccctcacgtcttcgtcaacaattccacagaatacgat
gagagccagtccacgctgtgtaccctaaagagtgagaacaactgcttcatctctttcagt
gtggtggctggagacgcagggagcactgtgtataatctaaagatgtacgactgtcctgag
ccccccaacatagctatgatagtactgggggtctctctgtccatcctcaccatcggcctc
atcctgctgggggtgtggaagctgttgatctcagtccacgaccgcaatgaggtcgccaag
tttgaggccgagagggcaaaggctagatggcagtcgggtacaaaccctctgtttagaagc
tcgacatcaacgtttaaaaatgtaacttataaaagcgcagggggaccgaaagttgatatt
cattcaatggatggctactga
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