Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373226
Help
Entry
139373226 CDS
T10872
Name
(RefSeq) CLIP-associating protein 1-B-like isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139373226
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139373226
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
139373226
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
139373226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EF3_N
Sec7-like_HUS
TOR1L1_N
Adaptin_N
Cnd1
HEAT_DAAF5
MMS19_C
ParcG
Paxt-1_C
MMS19_N
KH_DEAH11_1st
ZapG-like
Motif
Other DBs
NCBI-GeneID:
139373226
NCBI-ProteinID:
XP_070969585
LinkDB
All DBs
Position
18:23008709..23057855
Genome browser
AA seq
1544 aa
AA seq
DB search
MEWNMEYCMEQVMQKDLGRRLQVGQDIIDSILDKDKFQVLEQDQTMLDRMVDGVATNWVN
SSNFKVALLGMDILSALVTRLQERFRTQIGTVLPSLIDRLGDSKDQVRDQDQALLLKIMD
QAANPQYVWDRMLGGFKHKNNRTRESVCICLIATLNVYGAQGLTLSKIVPHICHLLGDPT
SQVRDGAMNCLVEIYRHVGERVRMDLGKKGLPQSRLNVIFSKFDEVQRSGNMILSPVSDK
NFEDDDSVDGGRSSSSKGPSSGKKTVSMGSFRRPSSASSTKSTGRDGPSVAAAGAVDEED
FIRAFEEVPAMQLFSNREMEDAMTKIREVLADDKRDWEHRVTALKKMRSLLLAGAVEFDG
FSQQLRLTEAAFKMSSKDLRSQVVREACITLGHLSYILGNRFDHCAESIMPTLLTLVSNS
AKVMATSGIAVIRLIIRHTHYPRLIPIVTGSCQSKSVAVRRRSFEFLDLLLHEWQTSSLE
RNVAVLTETIKKGVHDADSEARSVARKCYWTFHGHFSREAEQLFQALESSYQKALQSHMK
SSDSILSLPASDRSSSSSQESLNRPQSAKSSMGNTVTRTKAASSRGPSTPGSLQRSRSDV
DVNAAATACAKTRMTPVPSSPAPFSAASALPPGSYASLDNTPGNIRPEGRVRTRRTSSGS
GVGASPSVTDSRGRSRAKMVSVSQPGSRSGSPGRLLSHTYGRIPRATGATTPADRRPKVP
RSHGCSRDTSPDRSGLARSRIPRPSMSQGCSRDTSRESSRDTSPARGFSPLERLGLAHQA
RISASVNAMRILNTGTEVEAAVADALLLGDARNNKRRPVRRRYESPGIYSDDDANSDASS
ACSERSYGSRNGGPPHYMRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLVSQRILSRVE
LKRLCEIFTRMFADPHSKVFSMFLETLVDFITLHREDLQDWLFVLLTQLLKKMGADLLGS
VQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILRYIECLARQMDPADF
VNSSETRLAVSRIITWTTEPKSSDVRKSFHHSWAGEELSGRPSTTVASLPGEGNVEERCK
QAAQVVLIALFELNTPEFTMLLGALPKTFQDGATKLLHSHLRNSSNTGMASPSSTMGRTP
PPPRHPSSRSSPLTSPTNCSRGGALSPSMLEYDTENLNTDQIYSSLRGVTEAIQNFSFRS
QEDLMEPGRGKREDTPGVGPASHSGADVVEGPGGRTALDNKTSLLNTPSPRSFYNPYNYT
DTISAYDKAALKETVYEDDVEQLRDGRQECGGENKMLHTKNSSPAEQLELAGELLKELSN
PSERPEERRGALLELLKIAREDSLAVWEEHFKTMLLLLLETLSDQDHTIRALALRVLKEI
LRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEESASTLAGSIHPEQCIKVLCPIVQT
ADYPINLASIKMQTKVIERITKESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAVYS
VIGEELKPYLAQLTGSKMKLLNLYIKRAQTSTSNSSSSSDISSY
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggagtggaatatggagtactgtatggaacaggttatgcagaaggacctgggtaggaga
ctacaggtgggccaggacatcatagactccatcctggacaaggacaagttccaggtcctg
gagcaggaccagaccatgctggacagaatggtggatggtgtcgctaccaactgggtcaac
tccagcaatttcaaggtggctttgttgggaatggacatactctcagctttagtaacaaga
ctacaggaacggtttaggacacagattggaactgttttgccgagtttgatagatcgacta
ggcgactcaaaggaccaagtcagagaccaggaccaagctcttctactaaagatcatggac
caagctgctaacccacagtatgtatgggaccgaatgttaggaggattcaaacacaagaac
aacaggacccgggagagtgtctgcatttgccttatcgccacgttaaatgtatatggagct
caaggcttgaccctcagcaaaattgtcccccacatatgtcatcttttaggagaccctaca
agccaggtgcgagacggggccatgaactgtcttgttgaaatctaccgacacgttggggag
agggtgcggatggacctggggaaaaagggactgccacagtcacggttgaatgtcattttc
agtaaatttgatgaagttcaacgatcggggaacatgatcctgtcccctgtctcagataag
aactttgaagatgatgattcggtggacggggggcggtcctcctcttctaagggcccgtcg
tcagggaagaagacagtgagcatggggtcgttccgtaggcccagctctgcttccagcacc
aaatcaacagggagagatggtcctagtgtggctgctgcaggggctgtggatgaggaggac
ttcatccgtgccttcgaggaagtgcccgctatgcaacttttctctaacagggaaatggag
gacgccatgaccaagatcagggaggtgctggctgacgacaaacgtgactgggagcacaga
gtcactgcgttgaagaagatgcgttctctgctcctggcgggagcggtggagtttgacggt
ttctcccagcagctgcgtctcacggaggcagccttcaagatgtcctctaaagacctgcgc
tctcaggtggtcagagaggcttgtatcactctgggccacctgtcctacatcctggggaac
aggtttgatcattgtgctgagtccatcatgcccactctcctaaccctggtctctaactcg
gccaaggtcatggccacatccggaatcgctgtcatacgactcatcatcagacatacacac
taccctcgtctcattcctatcgtgaccggcagctgccagtccaaatctgtggccgtgaga
aggcgcagttttgagttcttggacctcctgctgcatgagtggcagaccagctctctagag
aggaatgtagctgttctgacagagaccatcaagaaaggtgtccatgatgcagactccgag
gccagatcagtggccaggaagtgctactggacgttccacggccacttcagccgggaggcg
gagcagctgttccaggctctagagtcgtcctatcagaaggctctccagtcccacatgaag
agttctgacagcatcctgtccctccctgcctcagaccgctcctcctcctcctcacaggag
agcctcaaccgccctcagtctgccaagagctccatgggaaacactgtgaccaggacgaaa
gcggcttcctccagaggtccctccaccccgggctctctacagcgttcccgtagcgacgtg
gacgtgaacgctgccgccaccgcttgtgccaagaccaggatgactcccgtgccctcctcg
ccggcccccttcagcgctgcctccgccctgccacccggctcctacgcctctcttgacaac
acacctggtaacattagaccagagggccgtgtgcgtaccaggagaacgagttcggggagc
ggcgtgggggcgagtccctctgtcacagacagtagggggagaagtcgagccaaaatggtg
tcagtgtctcaacctggcagtcggtctggctcccctggtcgtctcctgagccacacatac
ggcaggatccccagggcaactggagcgacaacgccagcagacaggaggcctaaagtcccc
cgtagccatggctgcagccgagacaccagtccagacagatcaggcctggcgaggagtcgt
atcccccggcccagcatgagtcagggctgcagcagggacacctctagggagagcagccgg
gacaccagccccgctcggggattctctcctctggagcgtctaggtctggcccaccaggcc
cgtatctcagcctctgtcaacgccatgaggatcctcaacaccgggaccgaggtggaggca
gctgtagccgacgccctgttactaggagacgccaggaacaacaagcggcggccagtcagg
cggcggtacgagtccccgggcatctactcagacgatgacgctaacagcgacgccagcagc
gcctgctctgagcgctcgtatggctcgcggaacggcggcccgccccactacatgagacag
acggaggacgtggccgaggtgctgaaccactgtgccagttccaactggtctgagaggaag
gaggggctgctgggactacagaacctgctcgttagccagagaattctcagtcgtgtggag
ctgaagcggttgtgtgagatcttcactaggatgtttgctgacccacacagcaaggtgttc
agcatgtttctggagaccctggtagacttcatcaccctgcacagagaggacctgcaggac
tggctgtttgtcctgctcacccagctgctgaagaagatgggagctgacctcctgggttcc
gtacaggccaaggtccagaaggctctggacgtcaccagggactcgttcccgttcgaccag
cagtttaacatcctgatgcgtttcatcgtggaccagacccagacccccaacctgaaggtc
aaggtggccatcctgaggtacattgagtgcctggcccgtcaaatggaccccgcagacttt
gtcaactccagcgagacgcgcctggccgtctcccgcatcatcacctggaccacggaacca
aagagctccgatgtccggaagagtttccaccatagctgggcaggtgaggagttgtcaggc
aggcccagcaccaccgtagcctctctacctggagaggggaacgtggaggagaggtgcaag
caggcggcccaggtggttctgatcgccttatttgagctgaacaccccagagttcaccatg
ctgctgggggccctgcccaagaccttccaggacggagccactaaactgctgcatagccac
ctgcgtaactccagcaacaccggaatggcttctcccagtagcaccatgggacggactcct
cccccgcctcgccaccccagcagtcgcagcagccccctcacctctcccaccaactgctcc
cgtgggggcgcgctctctcccagcatgttggagtacgacacagagaacctgaacaccgat
cagatttatagctccctgcgaggcgtcactgaggccatacagaacttcagcttccgcagt
caggaggacctcatggagccgggcagaggcaagagagaggacacgccgggtgttggacca
gcatcacactctggtgccgacgtggtggaggggcccgggggtcgcacggccctggacaac
aagacctccctactcaacaccccctccccgcgttccttctacaacccctacaactacaca
gacaccatcagcgcctacgacaaggctgccctgaaagaaacggtgtacgaggacgacgtg
gagcaacttcgagatggccgccaagagtgtggtggagaaaacaagatgctgcacaccaag
aacagttcccctgcggagcagctggaactggcgggtgagctgctgaaggagctgtctaac
cccagtgagaggccagaggagaggaggggagccctgttggagctgctgaagatagcccgg
gaggacagcctggcagtgtgggaggaacacttcaaaaccatgctgctcctgctgctggag
accctgtcagaccaagatcacaccatccgggccctggcactacgagtgctgaaggaaatc
ttacgtaaccagccggcccgcttcaagaactatgcagagctcaccattatgaagactctg
gaggcacacaaagactcccacaaagaggttgtgcgggcagcagaggagtcagcctccacc
ctggctggctccatccacccagagcagtgtatcaaggtgctgtgtcccatcgtccagacg
gctgactaccccatcaacctggcttccatcaagatgcagaccaaggtgatcgaacgcatc
accaaggagtcactccaccagctgctgcctgacatcataccaggactactgcaggggtat
gacaacacagagagcagtgtgaggaaggccagtgtgttctgtctggtggctgtctactct
gtcatcggtgaagagctgaagccctacctggcccagctcacaggaagcaagatgaagctg
ctgaacttgtacataaagagagcccagacatccaccagcaacagcagcagctcttcagac
atctcctcatactaa
DBGET
integrated database retrieval system
