Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373243
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Entry
139373243 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 9 isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139373243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139373243
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139373243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
TPR_IPO11
ADSL_C
Motif
Other DBs
NCBI-GeneID:
139373243
NCBI-ProteinID:
XP_070969642
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All DBs
Position
18:complement(24169227..24172653)
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AA seq
301 aa
AA seq
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MLATGAAVTTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSCGT
IAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPF
LHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVA
TFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN
SSPHTRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPT
Q
NT seq
906 nt
NT seq
+upstream
nt +downstream
nt
atgctggctacaggagcagctgtaaccacggctctggcccaagtggatagggaaaagata
taccagtggatcaacgagctgtccagcccagagacccgcgagaatgccctgcttgaactc
agtaaaaaacgggagtccgtgccagatttggctccaatgctatggcactcctgtggaact
atagctgctctcctgcaggaaattgtcaacatctacccctcaataaaccccccaaccctc
accgctcaccagtccaacagagtatgcaacgcattagcacttctgcagtgtgttgcctct
catccagagacaagatcggcatttctggcagcgcacattcctctattcctgtaccccttc
ttacacactgtcagcaaaacacgaccatttgagtacctccgactcaccagcctaggagtc
atcggtgccttggtcaaaacagatgagcaggaagtgatcaacttcctgttgacaacagaa
atcattcccctgtgccttcgcataatggagtctggcagtgagctttccaaaacggtagcg
acttttatactacagaaaatactccttgatgacacagggctggcatacatttgccaaacg
tatgaacgcttctcccatgtggccatgatacttggcaaaatggttcttcagctctccaaa
gagccctctgctcgtcttttgaaacatgttgtccgctgttacctacgcctgtcagacaac
tccagcccccacaccagagcccgagaggccctccgtcagtgtctaccagaccagcttaaa
gacaccacgtttgcccaagtcctgaaggacgataccaccaccaaacgctggttggcacag
ctggtgaagaacctacaggaaggccaagtcacagaccccagaggcatccctttgcccaca
cagtag
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