Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373327
Help
Entry
139373327 CDS
T10872
Name
(RefSeq) sorting nexin-27-like
KO
K17936
sorting nexin-27
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139373327
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139373327
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Others
Others
139373327
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
139373327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
PDZ_2
SNX17_FERM_C
USP7_C2
Beta-prop_CATSPERE
DarA_N
TetR_C_26
Motif
Other DBs
NCBI-GeneID:
139373327
NCBI-ProteinID:
XP_070969825
LinkDB
All DBs
Position
18:30369528..30414088
Genome browser
AA seq
564 aa
AA seq
DB search
MADVEGDEIRSALLSASSNGPAAGSVVGTGGQNATQVTSGPRMVKIVKSESGYGFNVRGQ
VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVSVEGATHKQVVDL
IRTGERELVLSVLSVPPQEADCLEAGDESAAQLSYDYSDKQAVPISIPTFKHVEQHAERF
VVYNVYMSGRQLCSKRYREFAILNQNLKREFASYIFPKIPGKWPFSLSEQQLDARRRGLE
EYLERVCSVRVIGESDIMQEFLSESDENYNGVSDVELRIALPDKTTISVRVRKNSTTDQV
YQALVMKVGMDSIMASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLALRKW
LFTSQEEELLRDKPLAVHYCFHQALDDVKKGFIKTEDKSYQLTKLAEQRKMAMYLSLLRS
CEGYNEVMFPHCSCDSRRKGHVITAISMHHFKLHACTEDGTLENQVISFEWAEMQRWDTD
EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKQIEKEASDKDNQNCS
NNEYLPALETQKGWRHLGGEIATS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttgaaggcgatgaaattcggtcggctctcctttcggcttccagtaatgga
cccgctgcaggttcggtagtcggtaccggaggccaaaatgctacccaggtgacgtcaggt
ccacggatggttaaaattgtaaagtcggaatcaggatatggattcaacgttcgtggacaa
gttagcgaaggaggacaactgcgaagcattaatggggaattgtacgcccctcttcagcat
gtcagtgctgttttgcctggaggggctgcggaccgagctggcatatcaaagggtgatagg
attcttgaggttaatggagtgagcgtggagggggccacccacaagcaggtggtggatctg
atccggaccggagagagggagctggtgctgtccgtgctgtctgtgcctccccaggaggcc
gactgcctggaggccggggatgagagcgcggcccagctcagctacgactacagcgacaag
caggccgtacccatctccatccccaccttcaagcacgtggagcagcacgccgagaggttt
gtggtgtacaacgtgtacatgtcgggcaggcagctgtgctccaagcgttaccgagagttt
gctatcctgaaccagaacctgaagagggagtttgccagctacatcttccccaagataccc
gggaagtggcccttctccctgtctgagcagcagctggacgcacgccgcaggggcctggag
gagtatctggaaagagtttgttctgtgcgggtgattggggagagtgacatcatgcaggaa
ttcctgtctgaatcagatgagaattacaatggtgtgtcagacgtggagttgcggatagcc
ctgccagacaagaccaccatctcggtcagggtgcgcaagaacagcacgactgaccaagtc
taccaggctttagtgatgaaggttggtatggacagcatcatggccagctactttgccctc
tttgaagtcatcaaccactcctttgtgagaaaactggcccccaacgagttcccccacaag
ttgtacgtgcagaactacacatcggccgtgccgggtacctgtctggccctccgcaagtgg
ctcttcacctctcaggaggaggagctgctcagggacaaacctctggccgttcactactgc
ttccaccaggcattggatgacgtgaagaagggattcatcaaaacagaagacaagtcttac
cagctgacaaaactggcagagcagcgcaagatggccatgtatctgagtctgctgcgctcc
tgtgagggatacaatgaggtcatgttcccccactgctcctgtgactcccggaggaagggc
cacgtcatcacggccatcagcatgcaccacttcaagctgcacgcctgcacagaggacggc
acgcttgagaaccaggtgatatcgtttgagtgggcggagatgcagcgctgggacaccgat
gaggagggcatggcgttctgctttgagtacgccaggggggagaagaaacctcgctgggtc
aagatcttcacaccatatttcaactacatgcacgagtgcttcgagagggtcttctgtgag
ctcaagtggaggaaacagattgaaaaagaggcctctgacaaagacaaccagaactgcagt
aacaatgaatatctccctgctctggagacacagaagggatggcgccatctagggggcgag
atcgccacatcctaa
DBGET
integrated database retrieval system
