Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373361
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Entry
139373361 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139373361
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139373361
mRNA degradation factors
5'-3' decay
Decapping complex
139373361
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139373361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139373361
NCBI-ProteinID:
XP_070969900
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All DBs
Position
18:34097126..34165881
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AA seq
492 aa
AA seq
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MAAARTENLGPVVLGLNKQNGQLRGLPKPASPQSGPLVLGSLSDEATGASQKAGAAQEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHTANLDCEVEE
ELKETGCQQEEP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccagaacagagaaccttggtcctgtcgtcctgggactgaacaagcagaac
gggcagcttagggggctgcctaaaccggcttctccccaatcaggacccctcgtcctgggc
tctctgtcagacgaggccacaggtgcatcccagaaagcgggtgctgcccaggagggaact
gggattaggtttggagatgactggaaaaagagcctacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggttagccagatcagt
atccagatcagtaagcacctgggcggcgtgaaggtcatggccaccacgggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctagatttgataaagaagggcgttgccaaagtggatagagtccaaatgatggtg
atggatgaggcagacaagctgttgtctcaggactttgtagtgctcatcgaggatatcatc
agcttcctggccaagggtcgtcagatcctactctactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggaactg
actctgaagggcatcacccagtactatgcctacgtcactgagagacaaaaagtccactgt
ctcaacacgctcttttcacggctgcagatcaatcagtccattatcttctgtaactccacc
cagagagttgagctgctggccaagaaaatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccagaggtattgacatccaagccgtcaat
gtcgtcatcaacttcgacttccccaagaacgccgagacatacctgcatcgcattggaaga
tcagggaggtttggtcacctgggcctggccatcaacctgatcacctctgaggaccgcttc
aacctgaagtccatcgaggaccagctggtcaccgacatcaagcccatccctggcagcatc
gacaagaacctgtacgtggccgagttccacaccgccaacctagactgcgaggtggaggag
gagctgaaggagacaggctgccaacaggaggagccctag
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