Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373423
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Entry
139373423 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139373423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139373423
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139373423
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139373423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
139373423
NCBI-ProteinID:
XP_070969998
LinkDB
All DBs
Position
18:37456644..37473430
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AA seq
934 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPATYTTENSEDDKR
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSSASGASSGAASSSLASMVTIAGGG
QANAGGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHQTQQARNSILSSNASSSPSNNIL
LPSPSASSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLG
LSGMPASLNTMAGLLAGSTSAPYAMAAAGSGTIGSPLAGKISSLSTSSTNSSAVGPVSGL
SDRSTGLLGSVPGAVGVSGGILGLGSGQSTVQGPPLVSPSPIGGGLAPGSSLGAIGSIGG
NSGSGAPSNSLGIGGGSAANARPPSGQKQNGSTSYSAVVADSTPDSALNIASQLQSSQPS
SLISTTNQLKDSGPNLLGSMTLPTSTPSPSYIESKPSGSSMLNGPLSYTQASESMKPQEP
LSTVKSMAEQAALGSAMEGELPPLHLTTDIFPSTTAPPGPPSAPQQPSLSEVSIPPSLGV
CPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDS
VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
caaatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcggatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtgtctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccattcccgccacgtacactacggagaactctgaagatgacaagaga
aggggacgttcgacagacagtgaaatcagtcagtcacctgtcaagaatggcaacccctct
tcgtcgttgtcttcatcgtcctcatcctcctcgtcctcctcttcatcatctgcctctggc
gcctcctcgggagcagcctcttcctcgctggcctctatggtgaccatcgccggaggcggc
caggccaacgctgggggcaacaacaacagccttctgggcaacatggggggtctcctctcc
aactctggcagctacagcgacgctacccagcagcaacttcagcagcatcaccaaacgcag
caggccagaaactcaatactctcctccaacgcctcctccagcccctcgaacaacatcctt
ctccccagcccctccgcctcctcgcccgccatctctagcacagccctcacacccaacacc
cagccgcaggctccgtcaaggccctctccgggctccaccttggggctcgggttgggcttg
ggccttggtaaaggcggcatgagtgggtcaccggctgtcagccagatgtcgggccttggc
ctgtcagggatgccggcgtccttaaacaccatggccggacttctggcgggctccacttcg
gccccctatgccatggcagcagcaggctccgggaccataggaagcccccttgcagggaaa
atcagcagcctgagcactagcagcactaactccagcgcagtgggaccggtgagcggactc
agcgacaggtccacgggccttttgggctctgtgcccggtgcagttggtgtcagtggtggg
atcctaggccttggctcaggacagtcgacagtccagggccctccactggtgtcccccagt
cccataggaggaggcctggcccctggaagcagcctgggagctataggaagcattggaggg
aactctggatcaggagcgccaagtaacagcttgggcatcggaggaggaagcgcggcgaac
gcaaggccacccagtggacagaagcagaatggtagcactagttacagtgctgtagtagca
gacagcacaccagattctgccctcaacattgccagccaattacaaagcagccaaccctcg
tctttgatctccaccaccaatcagcttaaagacagtggccccaaccttttagggtccatg
accctacccaccagcactccctcgccatcctacattgagagtaaaccttcaggcagcagt
atgctcaacgggccgctctcctacacacaggcctctgaaagcatgaagccccaggagcct
ctgagcactgtgaagtccatggccgaacaagcggcactgggctcagcaatggagggagag
ttgccccctctgcacctcaccacagacattttccccagcactacagcgcctccagggcct
ccctcggccccccagcagccatcgctctcggaggtcagcatccccccatcgctgggtgtg
tgcccgctggggcccgtacccctgtccaaagaccagctgtaccagcaggccatgcaggag
tcggcctggacgcatatgccccacccctccgactcagagcggatcaggcagtacctgatg
aggaacccgtgtcccaccctgcctttccaccaccaggtgccacctccccactccgactct
gtggagttctaccagagactgtccacggagacactgttcttcatattctactacctagag
ggcaccaaggcccagtatctggcagccaaggccttgaagaagcagtcgtggcggttccac
accaagtacatgatgtggttccagaggcacgaggagcccaagaccatcacagatgagttt
gagcaggggacgtacatttacttcgactacgagaagtggggacaacggaagaaggaagga
ttcacgtttgagtacaggtaccttgaagaccgagacctccagtga
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