Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373452
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Entry
139373452 CDS
T10872
Name
(RefSeq) collagen alpha-2(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139373452
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139373452
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139373452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
139373452
NCBI-ProteinID:
XP_070970054
LinkDB
All DBs
Position
18:complement(39049848..39099475)
Genome browser
AA seq
2145 aa
AA seq
DB search
MDIRDCPFRKKRRPWSVDLSSFALVTLVLALCQLPVARADPVDVLRMLQLPSLPEGVRKV
PGFCTSRRAGTADHAYRISKKAQISAPTNQLFSGRFPENFSIMALVKAHAGLQAFLLSIY
SEQGVQQLGVELGRSPVFLYEDQTGKPAPEDYPLFSGVNLADGKWHRIAISVSKKNVTLL
LDCKKRMTRALPRSKSPVVDTKGITVFGARLLDEEVFQGDIQQLLIASNPQAAYDFCEHY
SPDCDSPLPKTQSQDPNTYKDANGNADKRKPVVVKADKPIVVKAAKPVVVKAAKPVVVKA
AKPVEVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPV
VVKAAKPAPSKPAKAEIAKLEAKVATPATAKLAKTEPAAAKPTKAKPSPAKQAKAKPTAI
EVLLAKIKPTAVTPVVKPTPATKNGSGKKVHGKPVVEKKLNGNSKVNGNAKPVVEKKVKG
EAKVNGNGKTAEDKKVNGDRKSGSYRKANGNGVGAAKPGTTKAPTERKVTKVQIEKTVVS
KVKPGKPETEVKVKVVKTEITKAKPTESVIIKVPPFTKPAPKKELPEKTKVALDVNNIKS
MTQKMPPFGKTALSGTVVPVPEKPKKKPGNGYQQDVETANSEAGHTPTESDYYYEEAVLQ
PESEVIGQEATTGQVEGTLVAEEVELAKAGGEVEAFTEEEYVNGDLGMKEYDYSYKDYNE
PLPEGETGGNMGPALSAVTDEGGASVSAVKGEKGEPAVLEPGMLIEGPPGPEGQAGLPGP
NGPSGPPGSVGDPGERGLPGKAGIAGADGVPGPPGTSVMLPFRFGSSGGDKGPMVSAQEA
QAQAILSQARLALKGPPGPMGYTGRTGPLGTPGSAGLKGEGGDPGPQGPRGPQGLSGPPG
KSGRRGRAGADGARGMPGEGGPKGDRGFDGLPGLPGDKGHRGDTGGLGPQGGPGEDGERG
DDGDIGPRGLPGEPGPRGLLGPKGPNGISGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQG
TSGTQGMPGPQGAHGPPGEKGPTGKPGLPGMSGADGPPGHPGKEGPVGTKGNQGPNGPQG
TIGYPGPRGIKGTQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEGGVPGPRGEDGPEG
PKGRVGPPGELGPIGLVGEKGKLGVPGLPGYPGRLGPKGSLGFPGFPGTNGEKGTRGLIG
KLGPRGQRGPTGPRGQRGPRGSTGKPGAKGTSGSDGPSGPPGERGLPGPQGANGFPGPKG
PPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGPSGETGPLGERGHPGPPGPPG
EQGLSGPSGKEGTKGDPGPQGGPGKDGPPGLRGFPGERGMPGTPGGGGLKGSEGPAGPPG
TAGSPGERGQGGSGGPIGPPGRPGPQGPPGPSGEKGVPGEKGPIGPAGRDGVQGPVGLPG
AAGSIGVPGEDGDKGEVGEHGQKGAKGGKGEHGPPGPPGPMGPLGQPGAAGADGELGARG
QQGPFGAKGDEGSRGFPGAPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGSSG
ADGPQGPPGGVGNPGNLGDKGEPGEAGPPGIGGEPGKKGPRGEHGDKGEAGQPGTSGPAG
GRGGPGDDGPKGNPGPVGFPGDPGPPGELGPRGQDGAKGERGEDGEQGQAGSPGPTGENG
PPGGPGKRGLAGTRGPEGRQGEKGTKGDPGANGPPGKTGPVGPQGQPGKPGTEGLRGLPG
SVGEQGSPGLSGQKGPPGPLGPPGLPGLRGEGGDKGEKGHSGLIGLIGPTGEQGEKGDRG
LPGPQGTHGSKGETGVSGGTGPIGPGGPAGMPGPEGVKGAKGATGGAGPKGEKGVSGPPG
PPGPPGEVIQPMPIQISKKSKRSIDASRMLSETDTESAAADATGTEFLTGSEGMEEIFGS
LNSLRQEIETMRFPLGTKDSPARTCQDLKLSQPELKDGEYWIDPNQGCSRDSLKVFCNFT
AGGETCLYPSKSVDTVKLNSWTTEKPGSWYSEFATGSKLSYVDSNGEPIGVVQLGFLRLL
SVQARQNFTYHCHRSVAWADRTANNGHKRALHFQGANDEDLSYETSPYIKALVDGCSYRK
GFDRTVVEVNTPQVEQLPLRDLKITDFGESNQKFGFEVGPVCFMG
NT seq
6438 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgagattgcccttttcggaagaagcggagaccatggagcgtggacctttcc
tcttttgccttggtaactctggtgctcgcgctgtgccaactacccgtggctcgagcagat
ccagtggatgtgttgcggatgctgcagctgccctctctccccgagggggtgcggaaggtt
ccaggcttctgcacctcccggcgcgccggtaccgctgaccacgcctaccgcatctccaag
aaggcccagatctctgcccctaccaatcagctcttctcaggtcgtttcccggagaacttc
tccatcatggctctggtcaaggcccatgcgggcctccaggccttcctgctgtccatctac
agtgagcagggtgtccagcagctgggggtggagctgggacgctcccctgtcttcctgtac
gaggaccagaccggcaagcccgcgcccgaggactaccccctcttcagcggcgtcaacctg
gccgacggcaagtggcaccgcatcgctatctccgtgtcgaagaagaacgtcactctgctc
ctggactgtaagaagcgcatgaccagggccctgccccgcagcaaaagccccgtggtggac
accaagggcatcaccgtgttcggagcacgcctgctggatgaggaggtcttccagggtgat
atccaacagctgctgatcgcatccaaccctcaggctgcttatgacttctgtgaacactac
agccccgactgtgactcccctctacccaaaacccagtcccaggaccccaacacatacaag
gatgccaatggcaatgctgacaaacgcaaacctgtagtagttaaggcagataaacctata
gtagttaaggctgcaaaacctgtagtagttaaggcggcaaaacctgtagtagttaaggcg
gcaaaacctgtagaagttaaggctgcaaaacctgtagtagttaaggctgcaaaacctgta
gtagttaaggctgcaaaacctgtagtagttaaggcggcaaaacctgtagtagttaaggct
gcaaaacctgtagtagttaaggctgcaaaacctgtagtagttaaggctgcaaaacctgta
gtagttaaggcggcaaaacctgccccatccaaacctgcgaaagcagagattgccaagctt
gaggcgaaagttgccacacctgccacagccaaactagctaaaaccgaacctgctgccgcc
aagcccaccaaagccaagccttccccggccaaacaagccaaagccaaaccaactgcaatt
gaagtcctcctggccaagatcaaacccactgcagtcacaccagtggtcaagcctacacct
gccaccaaaaatggcagtggaaaaaaagtccatggcaagcctgtagtagagaagaaacta
aatggtaattccaaggtcaatggcaatgccaaacctgtagttgagaagaaagtaaaaggt
gaggccaaagttaatggcaacggtaaaactgctgaggataagaaagttaatggtgatagg
aaaagcggcagttacagaaaagctaatggcaacggtgtaggagcagccaaacctggaacc
actaaagccccgacagaaagaaaagtcaccaaagttcaaatagaaaaaactgtggtcagc
aaagtgaaaccaggaaaaccagaaaccgaagtcaaagttaaagtagtaaaaaccgagatc
actaaagccaaaccaacagagtcggtcatcatcaaagttcctcccttcaccaaacctgca
ccaaagaaagagctgccagagaaaaccaaggtggcgcttgatgtaaataacatcaaatcg
atgacccaaaaaatgcctccctttggcaagactgcactcagtggcaccgttgtccctgtg
ccggaaaaaccaaagaagaaaccaggcaacggttatcaacaggatgtagaaacggcaaat
tctgaggctggccacacccctacagagtcggattattattatgaggaggcggtcctacag
ccagagagtgaggtgattggacaagaagcgaccactggccaggtggagggaacgttggtg
gcagaagaggtagagttggccaaggcagggggtgaggtcgaggcctttactgaggaggag
tatgtgaacggagacctgggcatgaaggaatacgattattcctacaaggactacaacgag
cccctgcctgagggagagaccgggggcaacatgggccccgctctgtccgctgtgacagac
gagggaggcgcctcagtgagcgccgtaaaaggcgagaagggagagcctgctgtccttgag
cctggtatgttgattgagggacctccgggacctgagggacaggcaggtctcccgggacct
aatggcccatctggccctcctggctctgtcggtgatcctggcgagaggggcctccctgga
aaggctggtatcgctggtgccgatggggtgccaggccctcctggaacgtccgtcatgctg
cctttccgtttcggaagcagtggaggtgacaagggtcccatggtctcagcgcaggaagcc
caggctcaggccattctgtctcaggccaggctggctctgaagggaccacccggaccaatg
ggctacactggacgcacaggacccctgggtacccctggaagtgctgggctgaagggtgaa
ggtggggatcctggacctcagggccccagaggaccacagggtttgagcggacctcccggc
aaatcaggaagaaggggtcgtgctggagctgatggagccaggggcatgccaggagagggt
gggcctaagggtgaccgcggtttcgatggcctgcctggattgcctggggacaaaggacac
aggggtgataccggaggattgggaccccaaggaggtcctggagaggacggagagagggga
gacgacggagacatcggacccagaggacttccaggtgaacctggacctcgtggtttgctc
ggtcctaaaggtccgaacggaatctccggacctcctggtgtgcgtggaaacgacgggccc
cacggtcctaaaggaaacctgggtccccaaggagagccaggccccccagggcagcagggt
acctcaggaacacagggaatgccaggaccacagggagcccatgggcccccaggagaaaag
ggccccacagggaaacccggtctgccaggcatgtccggagccgatggcccccctggtcac
ccaggaaaggagggacctgttggcaccaaaggaaaccagggccccaacggtcctcaggga
actattggctatcctggccctcgtggcattaagggaactcaaggtatccgtggactgaag
ggtcacaaaggagagaagggagaagatggcttccctggaatcaaaggagactttggtgtc
aagggggagagaggagagggtggagtgcccggccccaggggagaggacggtcccgagggg
ccaaagggccgcgttggcccccctggcgagcttggacccatcggcctggtcggagagaag
ggtaaacttggtgtccctggacttccgggctatcctggaagacttggacctaagggctcc
ctcggtttcccaggattccctgggaccaacggcgagaaaggaacacggggtctgattgga
aagctgggacccagaggacaaagaggaccaacgggccccagaggtcagagaggaccgaga
ggatctactggcaaaccaggcgccaagggtacatcaggaagtgacggcccatctggtcca
ccaggggagaggggactgcccggacctcaaggagcaaacggtttcccggggccaaaggga
cctcccggaccaccagggaaggatggactgcccggacaccctggacagagaggagaagtt
ggattccaaggaaagactgggccacctggacctccaggtgttgttggacctcaaggtccc
tcaggagagactggccccctgggcgagcgcggtcaccccgggcctccaggaccaccaggc
gagcaaggactctccggaccctctggcaaggagggaactaagggagaccctggtccccaa
ggcggccccggcaaagatggacccccaggactgagaggcttccccggagagagaggaatg
cctggcaccccgggaggcggcggactgaaaggaagcgaaggcccagcaggacctcccgga
acagctggatccccaggcgagagagggcagggaggcagtggaggccccatcggaccccca
ggaagacctggcccacaggggcctccaggaccatcaggagagaagggcgtgcccggggaa
aaaggtccgatcggcccggctggtcgtgacggtgtccagggcccagtgggtctgccaggt
gctgccggatccatcggagttccaggagaggacggagacaagggtgaggttggagagcac
ggccagaagggagcgaagggcggcaaaggagagcatggtcctcccggtccaccagggcca
atgggtccactcggtcaacccggcgctgctggagctgatggagaactaggagccagaggt
cagcaggggccatttggagccaagggagatgaaggatcaagaggattcccaggggcccca
ggtcccattggactgcagggattgccaggcccatcaggagagaagggagagacgggagat
gtcggaccaatgggtccacctggccccccaggaccccgtggccctgctggttcaagcggc
gctgacggtcctcaaggtcctcctggtggtgtgggtaaccctggaaacctgggagataag
ggagagcctggcgaagccggaccacctggaatcggaggagagccaggaaagaagggccca
cgtggagaacacggagacaagggagaggcgggacaacctggtacctctggccctgctgga
ggaagaggaggccctggagacgacggacccaagggaaaccctggccctgttggtttccca
ggcgaccccgggccccctggtgaactcggccccagaggtcaggacggagcaaagggagag
agaggagaggacggtgaacaaggacaagctggatctcctggacccactggtgagaacggg
cctcctggaggaccaggaaagaggggtcttgctggaacgagaggaccagagggacgacag
ggagagaagggaactaagggagatccaggtgccaacggacctccaggaaagacaggcccc
gtcggacctcagggtcaaccaggaaaaccaggaactgagggtctgagaggactccctgga
tcagtgggcgagcagggttctccgggcctttccggccagaagggacctcccggaccgctg
ggaccgccaggtttgccaggactgcgcggcgagggcggtgacaagggagagaagggccac
tcgggtctgattggtctgattgggcccaccggagagcagggagagaagggagacagggga
ctgccagggccacaggggacacacggatccaagggagagactggtgtttctggaggcact
gggcccatcggtcctggtggccctgctggtatgcccggtcccgaaggtgtgaagggagct
aagggtgctacaggaggagctggtcccaagggagagaagggtgtctcaggaccccccgga
cctccaggtcctccaggcgaagtcatccagccaatgcccatccaaatctccaagaagtcc
aagcgctccatcgacgccagccggatgctgtctgagacagacacagagtcggctgcagcc
gacgccaccggcacagagttcctgacaggcagtgagggcatggaggagatctttggctca
ctgaactcgctgagacaggagattgagaccatgcgcttccctctgggcaccaaggacagc
cccgcacgcacctgccaggacctcaaactcagccagccagagctcaaggacggagagtac
tggatcgaccccaaccagggttgctctcgcgactctctcaaggtgttctgcaacttcacc
gctggtggggagacgtgtctgtaccccagcaagagcgtggacacggttaagctcaactct
tggaccacggagaaaccgggctcctggtacagtgagtttgcaactggcagcaagctttcg
tacgtggactctaatggcgagccgatcggcgtggtccagttgggcttcctgcggttgctg
agtgtccaggcccgccagaatttcacctatcactgccaccgctctgtggcctgggccgac
cgcactgccaataacggccacaagagggcactgcacttccagggcgccaacgatgaggac
ctcagctacgagaccagcccatacatcaaggccctggtcgacggctgctcttatcgtaag
ggcttcgacaggacagtggtggaggtgaacacgccccaggtggagcagcttcctctgcgg
gacctcaagatcacagactttggggagagcaaccagaaatttggctttgaagtgggacct
gtctgtttcatgggctaa
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integrated database retrieval system
