Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373464
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Entry
139373464 CDS
T10872
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
139373464
03320 PPAR signaling pathway
139373464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139373464
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139373464
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
139373464
Nuclear receptors [BR:
ocla03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
139373464
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
139373464
NCBI-ProteinID:
XP_070970103
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Position
18:complement(39125621..39148160)
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AA seq
478 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPVTSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINMYTRSAEINSTVSMSGLHAVSSSDDVKPPFGLGGHS
PGGPMLSQKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQ
RNRCQYCRYQKCLACGMKREVVQDERQRSVQEERQRNKERESEVESTSAINEEMPVEKIL
EAEMAVEQKTELHADGSSGDSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQV
ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGA
IFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYC
KQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagacagctcctctgtgtcctcccctccctcg
ggccagcgctcgccacccctgacccccacagctgctgccatgacttctctgcctcccgtc
acttcggccgtcaacagccccatcagcagcatgggctcgcccttctctgtcatcagctcc
tccctggggtcaccctgcctgcccgggacaccctcggtgggctacggccccatcagcagc
ccccagatcaatatgtataccaggagtgcagagatcaactccacagtgtccatgtcgggg
ctgcacgcggtcagcagctcggatgacgtgaagcctccgttcgggctgggaggtcacagc
ccagggggccccatgctctcccaaaagcgcctgtgtgccatctgtggtgaccgctcctcc
ggtaagcactacggagtgcacagctgcgagggctgcaagggtttcttcaagcgcacggtg
cgcaaggacctgagctacacctgccgggacaacaaggactgcctggtggacaagcgccag
cgcaaccgctgccagtactgccgctaccagaagtgcctggcctgtggcatgaagagggaa
gtggtccaagatgaacgacagagatccgtgcaggaagagcgccagaggaacaaggagcgg
gaaagcgaggtggagtcgaccagtgccatcaacgaggagatgcccgtggaaaagatccta
gaggcagagatggccgtggaacagaagaccgagctgcatgccgatgggagctccggggac
agctcgcccaacgacccggtcaccaacatctgccaggctgcagacaagcagctgtttacc
ctggtggagtgggccaagagggtcccccacttctctgagctggccctggacgaccaggtc
atcctgctacgtgccggttggaacgagctgctgatcgcttccttctctcaccgctccatc
agtgtgaaggacggcatcctattggccaccggccttcacgtgcacaggaacagcgcccac
agtgccggcgtgggagccatcttcgacagggagagtgcgcacaatgcagaggttggagcc
atatttgacagagttctcacggagctggtcagtaagatgagagacatgcagatggacaag
acagagctcggctgcctccgagccatcatcctcttcaacccagatgccaagggcctgtcc
agccccagtgaagtggaattgctgagggagaaggtgtacgcatcgctggagtcctattgt
aaacagagataccccgaccagcagggcaggttcgctaagctcctcctccggctgccagcg
ctgcgctccattggcctgaagtgcctggagcacctgtttttcttcaaactgattggcgac
acccctatcgacacgttcctcatggagatgctagaggcgccccaccagctcacctaa
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