Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373468
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Entry
139373468 CDS
T10872
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139373468
04518 Integrin signaling
139373468
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139373468
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139373468
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139373468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
Fibrinogen_C
EGF_Teneurin
fn3
EGF_2
EGF_Tenascin
hEGF
DUF7949
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF
CDC45
PTPRCAP
Nop14
Ig_J
Motif
Other DBs
NCBI-GeneID:
139373468
NCBI-ProteinID:
XP_070970120
LinkDB
All DBs
Position
18:39318544..39347234
Genome browser
AA seq
2123 aa
AA seq
DB search
MPLVSSFLLLLLACPALLTLSGSQSLQTGGQRAPRNTKPEGGGQPIKVVISEACVQGDSS
QNQGKELDLEPGSPLVLTHRIRLVPGSCGGGCEAEFAALRDRLERLEKEVSALREKCGGP
EGGCCTSQQSKGTECSIKPEGDECPNECSDQGRCEDGKCVCFPGFSGPDCSLSDCPGNCN
DKGKCVNGQCVCDPGFTGPDCSSESCPWNCNNKGRCENGKCVCNTGFTGPECSTKACPGN
CNNKGRCENGKCVCDPGFTGPNCSSESCPGNCNNKGRCENGKCVCNTGFTGPDCSTKACP
GNCNNKGQCVNGKCVCNTGFTGPDCSTKACPGNCNNKGQCVNGKCVCNTGFTGPDCSTKA
CPGNCNNKGQCVNGKCVCNTGFTGLDCSTKACPGNCNNKGQCVNGKCVCDSSFTGPDCST
KSCPGNCSNRGKCVNGQCVCDSGFTGPDCSAKACPNNCSNKGRCVNGKCVCEVGFSGQDC
AAKGCPDNCSNKGRCVKGRCVCRRGFAVPDCSQCEAGFTGADCGTAMSGVSQLNTKDVTE
SSVTLFWTPPPVQYDTYHVTFASQKEGDQQITSQVGGKLTAYTQTGLAAGQAYTVTITGE
IDGRMGAESTAEFTTLISGPTNLQVVKTTTTSAVVQWEQSQGDIDRYRLTVTPNQTDGTA
KGRQDLTLPPERDSAQIDGLDPGHLYDITLVAEKGGIKSKPTTVQVTPGKSTKTISRVTM
PVAPGVASHEGDSAGNTKPVKDILNTKAKGEEPERVKDWSGPGSVTVEGTNGTKEDTFVR
TSTRPLVNTNYRVIPKPGDRITLPRKPYIGGSIRFNGTRVGQGGRRVGHSLLKKPMSRNP
MEVPKVKETLDTDSKPENPFVGDKTVALTVKETNLETSPLGEKDETLTKAYPVGILPVNG
TSRSGSEPSVKDLPDRKKDTEIETNEPGPGTEGLEHTTTSERNTTVHPNGKKCVNKVKLT
HRKINVTRRERVIGGRLNGTIVQSKPTAGQGLAEKLDGALKVSETGHSKTTFHERNRVIH
TQSKADDISPHTTQSPTYPTSSSPVSPTSHMSLSSSAPAKHDESMTGMGQPMTDRDVANG
ETLPVPQTQSSNLPPEREPTSSSESEQNGKGPSPSNPEDSYSGKDHVAEVGVSKDGAKNA
NEGLFGTKQNKTKTLRVGGSPFRRLPPKGPYQRRPNLNMRPFQNRTRSPFSAPAKQNESK
TGTGQPMTDRQLVFPKTLTVSPAQSSTLPPDAQPERAPKSSSESEHSGKGYSSSSSTSEE
SDFTKENVAVAEDGISRDGDRETDVVSSGTERNRSRILTLGSTPPLRRLPPKGTQLRRPH
PNMGAFPNRTRTNLIPPWHPSRGPIRRPFPPKLTNRDNGIIVQTPQTGEQGTYSTSQNDT
NTGLKPKPLLKKTNATAGKIARDQTRIRNNSSLSQRGQDSKTGHPDKGSQVSKNADSRDS
PNQINGSDVTTTGKTGQPLNSVGVQSITSGGLILVWEAPEGMYRNFMVTREGHGSKNEAE
EEEEKEEEEEESESEEDRQEEGEEEGQTEKENNGNEEESEMGVSQGKEGREENTVTNSKS
DNQRQSSDSNATAKVGDGGTIKFSKVLPGSARSFRFQNLHPQTRYSLSVFGKGPGLRSKI
HRLIVSTGPELPSGLVFSEVTETSLSVSWTKPKSPVSGFKVTYTHTQEGEPVSVMVDSAD
STLALSKLSPGSSYEVSVISVLGLDESDAIKDLVMTLPDPPTALQAINVTDTKALLLWRP
ALATVDRYVIVYGSEKGSDDVKITVSGNAAEQQLKDLQGSTMYTVTVTSQLGNLDGPAAI
TVFTTTSGSGGDGEVPRDLKASQVTPRSALLTWKPPSAAVGSYKLTYQTEGQEMQEVTID
STVTEFKLTRLHPMSKYTVQLQGERGGSYTAAISTEFTTGNLRYPFPSDCSQEMLNGMHE
SGEVEIFPRERQGKPVLVYCDQVTDGGGWTVFQRRMDGKTDFFRGWENYSKGFGELSGEF
WLGNENLHNLTSMAPMTLRVDLRAGDESVFAKYSTFTVDTVRRNYALKVSGYSGTAGDSM
SYHNGRMFSTRDRDPAPFITRCAMSYRGGWWYKNCHQANLNGLYDTSVNHQGLIWTAWKG
KDYSVPFTEMKLRPTSFTPPTQG
NT seq
6372 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttgtctcatccttcctcctcctgctcctcgcctgccctgccctcctgacccta
tcaggttcccagagcctgcagactgggggtcaaagggcacccaggaacacaaagccagag
ggtggcgggcagccaatcaaagtggtgatctctgaggcatgtgttcagggggactccagt
cagaaccagggaaaggaactggaccttgagcctggttcccctctagtccttacccatcgg
atccgactggttccggggtcgtgcggaggcgggtgcgaagccgagtttgctgccctgcga
gaccgtctggagaggctggagaaggaggtgtctgccctgagggagaagtgtggaggccca
gaggggggctgctgcacgtcccagcagagcaaaggcactgagtgctccatcaagccggag
ggagacgagtgtcctaacgagtgcagtgaccagggacgctgtgaggatggcaagtgtgtc
tgcttcccagggttcagtgggccagactgcagtttgtctgactgccccggcaactgcaat
gacaaggggaagtgtgtgaacggccagtgtgtgtgcgacccaggtttcacagggccagac
tgctcttcagagtcctgtccttggaactgtaacaacaaggggcgttgcgagaacggcaag
tgtgtgtgcaacactggcttcacagggcccgaatgctccaccaaggcatgccctggtaac
tgtaacaacaaggggcgatgtgagaacggcaagtgtgtgtgcgacccaggtttcacaggg
cccaactgctcttcagagtcctgtcctggtaactgtaacaacaaggggcgttgtgagaac
ggcaagtgtgtgtgcaacactggcttcacagggcctgactgctccaccaaggcatgccct
ggtaactgtaacaacaaggggcaatgtgtgaacggcaagtgtgtgtgcaacactggcttc
acaggacctgactgctccaccaaggcatgccctggtaactgtaacaacaaggggcaatgt
gtgaacggcaagtgtgtgtgcaacactggcttcacaggccctgactgctccaccaaggca
tgccctggtaactgtaacaacaaggggcaatgtgtgaacggcaagtgtgtgtgcaacact
ggcttcacaggccttgactgctccaccaaggcatgtcctggtaactgtaacaacaagggg
caatgtgtgaacggcaagtgtgtgtgtgatagcagttttacagggccagactgttctacc
aagtcctgccctggcaactgcagcaaccgtggaaagtgtgtgaacggccagtgtgtctgc
gatagcggctttacagggccagactgttccgccaaagcatgtcccaataactgcagcaac
aagggaaggtgcgtgaacgggaagtgcgtgtgtgaagtgggcttcagcggacaggactgc
gccgctaagggctgtcccgataactgcagcaacaaagggcgctgtgtgaaggggaggtgt
gtgtgtcgccgtggtttcgccgtcccggactgcagccagtgtgaagctgggttcactgga
gctgactgtggcaccgccatgtctggtgtgtcccagctcaacaccaaggacgtcactgaa
tcctctgtcaccctcttctggaccccacctccagtccagtatgacacctaccacgtcacc
ttcgccagccagaaagagggcgatcaacagataacatctcaggttggaggcaagctcacg
gcctacacccaaacaggcctggcggccgggcaggcgtacacggtgacaatcactggagaa
atagatgggagaatgggcgctgagagcacagcagaattcaccactcttatctctggtccc
acaaaccttcaagttgtgaagacaaccacaacatctgccgttgtccaatgggaacaatcg
caaggagacatcgacaggtatcgcttaactgttacacccaatcagacagacggaacagcc
aagggaagacaagacctgaccctgccccctgagagggactctgcccagattgacggtttg
gacccgggacatttgtatgacatcacattagtggctgaaaaaggcgggatcaagagcaag
ccaacaacagtccaagtcactcctggaaaatccacaaagacaatatccagggtgaccatg
ccggtagcaccaggagtagcaagccacgagggagactcagccgggaatacaaagcctgtg
aaggacatcctcaacacgaaggccaagggtgaagaaccagagagggtgaaggattggagt
ggaccaggctctgtgacagtcgaaggcaccaatggaaccaaagaggacacatttgttaga
accagtacaagaccacttgtcaacacaaactacagggttatacctaaaccaggtgataga
ataaccttgcccaggaaaccatacattggaggctctatccgttttaatggtacaagagtc
ggccagggtgggaggagagtgggtcacagtcttctgaaaaagcctatgagcagaaatcca
atggaggtgccaaaggtcaaggagaccttggatacggactctaaaccagagaatcccttt
gttggggacaagactgtagccttaactgtgaaagaaactaacctggagacgagtcctctt
ggagaaaaagatgaaactttgacaaaggcatatcctgtcgggatccttcctgtaaatggc
acttcaagatctggttctgaaccatcagtgaaggacctacccgatagaaaaaaagataca
gagattgaaacaaatgagccagggccagggacagagggtttggagcataccaccacatca
gaaagaaatacgacagttcacccgaatgggaagaaatgtgtcaacaaggttaaattgaca
cacaggaaaatcaatgtgacacgtagagagagagtcattggagggcggttgaatggcaca
atagttcaaagtaaacccacagcagggcagggtttagctgaaaaattggacggtgcccta
aaagtgtccgaaacaggacattcaaagacaacatttcatgagcgtaaccgggtcattcac
acacagagtaaagcagatgacatttctccacacaccacccaaagtcctacatatccaact
tcctcttcaccagtatcacctacttcccacatgtcactttcttcttcagctcccgctaag
catgatgaatcaatgaccggtatgggtcaacctatgactgacagagacgtggcgaatgga
gagactttgcctgttccccaaacccaatcatccaacctccctccagagagggaaccaaca
tcctccagtgaatcagaacaaaatggtaaaggaccatctccctccaaccctgaggactca
tactcaggtaaagatcatgttgcagaagtgggagtcagcaaagatggagcgaaaaacgct
aacgagggattgtttggaaccaaacaaaacaagacaaagactctgagagtgggcggctca
ccttttcgccgcctacctccaaaggggccctaccaacgccgcccaaacctaaatatgaga
ccattccaaaacaggacacgttcacctttttcagctcccgcaaaacaaaatgaatcaaag
accggtacgggtcaacccatgactgacagacaactagtgtttccaaagacattaaccgtt
tccccagcacaatcctcaaccctccctccagatgctcagccagagagagcaccaaagtcc
tccagtgaatcagaacacagtggcaaaggctattcatcatcatcatccacttcagaggaa
tcagactttactaaagaaaatgttgctgtggcagaggatggtatcagcagagatggggac
agggaaactgacgtggtgtcgtctggaactgaacgaaacaggtcaaggattctgacactg
ggcagcacaccacccttacgccgtctacctccaaaggggacgcagctacgccgtccacac
ccaaatatgggagcattcccaaacaggacgcgaacaaacctgatacccccttggcatcca
tcaagaggccccatacgcagacctttcccacctaaactgacaaacagggacaacggcatc
atcgttcaaacccctcaaacaggggagcagggcacctacagcaccagccagaatgacaca
aacacaggcctaaagcccaaacctctcctcaagaaaacaaatgccacagctggtaaaata
gcacgagatcaaacacgcataagaaataacagtagcttgagccaaaggggccaagattca
aaaacaggccatcctgacaaaggcagccaagtgagtaagaacgctgactcaagagacagc
ccaaaccagataaatgggtcagatgtcactactactggaaaaacaggccagcctctaaac
tcagtgggggttcaaagcataacctcaggagggctcatactcgtttgggaagcaccagag
gggatgtacagaaatttcatggtaacccgggaagggcatggaagtaagaacgaggcagag
gaagaggaggagaaggaagaggaagaggaggagagcgagtcagaggaggataggcaggag
gaaggggaggaggagggacaaactgagaaggagaacaatgggaatgaggaggaaagtgaa
atgggggtgagtcaaggtaaggagggcagggaggagaacactgttaccaatagcaaaagt
gataaccaaagacagagcagcgacagtaatgctacggctaaagttggcgatggtggtact
atcaagttctccaaagtccttccggggtcagctcgctcattccgattccagaatctccat
ccacagacccgctattccctgtccgtgtttgggaagggtcccggactacgctccaaaata
caccgactcatcgtcagcacaggcccagagcttccctcaggtcttgtattcagtgaagtg
actgagacgtctctctctgtgtcctggaccaagccaaaaagtccagtgagtggcttcaag
gtcacctacactcacacacaggaaggggagcctgtctcagtaatggtggactctgcggat
tccactctggcactgtcaaagctctctccggggtcctcctatgaggtcagtgtgatatcc
gtccttggactggacgagagcgatgcaatcaaagacctggttatgacactccctgaccct
ccaacggctctccaggccattaatgtcacagacaccaaggcgttgctactatggcgacca
gcactggcaacggttgaccgctacgtcatagtttatggctctgaaaaagggtcagatgat
gtgaagatcactgtgtcgggcaacgcggccgagcagcagctgaaggacctgcagggctcc
actatgtacaccgtcacggtcaccagtcagttgggcaacctggatggccctgccgccatc
accgtcttcaccaccaccagtggatctgggggagatggggaagtcccgcgtgacctgaag
gccagtcaggtgactcctcgctcagcgttgctgacgtggaaaccgccctctgccgctgtg
ggaagctacaagctgacctatcagacggagggacaggagatgcaggaggttaccattgac
tccacagtaacggagttcaagttgaccaggctgcatcccatgtccaagtacaccgtgcag
ctacagggagagaggggagggagctatactgctgcaatttccactgagttcaccacaggg
aatctccggtaccccttcccaagtgactgttcccaggagatgctgaacggaatgcatgag
tctggagaggtggagatcttccccagggaaaggcagggaaaaccagtgttggtctactgc
gaccaggtgactgatggaggcggctggacggtcttccagagaaggatggatgggaaaact
gacttcttccgaggttgggagaactacagcaaaggatttggagaactgagtggggaattt
tggctgggtaatgagaacctacacaatctaaccagcatggcaccgatgaccctacgtgtg
gacctccgtgcaggggacgaatccgtgtttgccaagtactccacgttcacggtggacact
gttaggaggaactacgctctcaaagtgtctgggtacagcggtacagcaggtgactctatg
agttaccacaacgggcgcatgttctctaccagagacagagaccccgcgcctttcatcacc
cgctgcgccatgtcctatagggggggttggtggtataagaactgccaccaggccaacctt
aatggcctctacgacaccagtgtcaatcaccagggtttgatctggactgcctggaaaggc
aaggattattccgtccctttcaccgagatgaagctcagaccaacatctttcacccctcca
actcaggggtaa
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