Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373564
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Entry
139373564 CDS
T10872
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
139373564
NCBI-ProteinID:
XP_070970325
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Position
18:complement(45122921..45201466)
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AA seq
1624 aa
AA seq
DB search
MELRLACRASLVLVVLALALSGQRVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGRYSTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAAKGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIVAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGSRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKFIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEAPPIEIPTPTPAGVEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGDKGDTGALGAAGPTGLKGAKGETGKVITVKGDRGEKGDPGSQ
GTSGDKGSNGEKGTSGAAGLAGKDGSKGERGDSGLAGDQGLPGPLGPKGIQGDSGLPGLS
GPRGVGGEKGLKGDKGSAGLQGDKGIDGFPGKPGVPGKEGLGGLTGAPGAAGLKGEKGET
GPAGMPGDMVQRDGLKGEAGPPGPRGPPGPDGPPGPPGATGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGSQGPPGGQGRPGQTGPPGLPGEIGFSGKPGEAGKAGLPGNDGLDGL
PGNDGAKGPRGESGLDGFPGKPGPKGEEGPPGPRGPGGEGGKVGLTGQPGVVGPKGEKGG
QGDQGQGGSLGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGTPGERGEKGEQGNPG
DIGQRGVPGEQGFAGLPGPQGPKGDIGPKGETGRQGEPGPPGLQGTQGTRGLPGNVGIPG
TIGPPGIAGQRGERGEMGKEGRGGPPGPPGDTGIQGPPGLPGKGKDGQNGDPGQQGIEGQ
PGQKGQPGSQGLQGVPGNRGPPGEGKVGPPGPSGPNGAVGPAGMRGLSGVAGTQGPAGHN
GLPGRPGEKGSPGEPGAAADLSDLNLKDVCSDCPAGAPGQPGLPGTPGDKGQAGPPGKNG
QDGYQGQAGSAGTSGPPGANGEKGVKGDRGPQGGPGDKGEIGHTGPPGHPGAAGIMGNPG
NNGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRQGEQGESGKQGEPG
PQGQPGLRGMPGFKGHRGEPGPPGSKGEDGKEGRSGPEGKPGQDGNIGPLGPEGLSGRRG
ENGKPGEPGPSGKPGAPGTPGPAGAKGDPGNPGLPGFSGPKGPLGPTGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGSVGDPGMPGNPGPPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNPGQPGPRGESTSLETMRRLIQEELAKALDDKMAYLMAQIQPAHVKSTAGRPGPPGP
SGKDGSHGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGEDGVGQRGEIGPSGPI
GPAGIPGYGKDGQPGAAGAQGEPGNPGPHGQPGPSGPPGQCDPSQCAYYASLGSRPHTKN
VKGT
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactggcatgcagggcttccctagtcctggtcgtactggcactggctctc
tcaggacagagggttgatgctcaaagcagggcaggctgtaagaacgtgcactatgacctg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcccaccaccgagttcaacctgggacggtacagcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccatcagctacaccaccaccaacatcttcacagagcgggccggggccaggcctgcagcc
aagggcatccagaaggtggctatcctcctgacagacgggaggagtcaggattacgtgttg
gaaccgtcaaaggcggcggcgaaggccggggtgaggatgttcgctgtgggcatcggggag
gctctgaaggtggagctggaggagatcgttgcagaacctaagaacgctcacgtgttccat
gtgacagacttcaatgccatcgacaagatcagagggcggctgaggagacggctctgtgaa
aatgtgctatgccccaatatgaaggtccaaccagaccgcttcaagcccaacagcaccagc
tatggattggaagaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggatcaaggtttgatgagggccagagctcctatgttcgacttgggaccatgcctatt
gtacaacagacagaagacgtgttccctcaaggtctgccagatgaatatgcctttgtgacg
actttcaagttcaggaagacctcgagacgggaggactggtacctctggcagatctttgac
aagtatggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagacgcagtgagagcagtgttcaagaacgaggaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgtcgaggccaaggctgtgtct
ctctacctggactgtaaattcatccagaccctgcccatcggggacagggaggacatcgat
atccacgggaagactgtgatcggaaagaggctgtacgacagcgtgcccattgattttgac
ctccagaggatgatcatctactgtgattccaaacacgctgagctggagacctgctgtgat
ctgcccaccgggccatgccccaagaaggtggtgacggaggcccctcccatagagatcccc
acccccacccctgcaggtgtggagcagcagagaggaccccaggcggtcaactgctcctgt
cccgctggagagaggggagagatcggtgtacctggggttgccggtcccaagggtgataag
ggtgatactggtgctctgggagcagctggacctactggcctcaagggagccaaaggagaa
actggcaaagtaataactgtcaagggagacagaggtgagaagggggatcccggtagccag
gggacatccggtgacaaaggatccaatggggagaagggaaccagtggagcggcaggtctt
gctgggaaagatggatctaaaggagaaagaggtgattctgggctggcaggcgatcaagga
ttacctggacctctgggaccaaagggaattcaaggagactcaggacttcctggtttatct
ggacccagaggcgtcggtggtgaaaaaggtttgaaaggagataaaggatctgcaggatta
cagggtgacaaaggtattgatggattccctggaaaacctggtgttcctggaaaagagggt
ttgggaggactgactggtgcacctggagccgctggcctgaaaggggaaaagggagagacg
ggccctgctggaatgcctggggatatggttcaaagagatggcttgaaaggagaggctgga
ccgccaggacctcgtggccctccaggacctgatggtccccctggaccccctggtgcaact
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgttgacgggctacccggaccaccgggttcccaggggcctcctgga
gggcaaggaagacctggacaaactggacctcctggtctacctggtgagattggattttca
gggaaaccaggagaggcaggcaaagcaggtttacctggaaacgatgggctggacggactt
ccaggcaatgacggagccaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtgaggaaggaccaccgggaccaagaggacctggaggagagggg
ggaaaagttggtttaactggacaaccaggtgttgttggaccaaaaggagagaaaggagga
cagggtgaccagggacaaggcggctctctcgggccaaagggtgacaaaggtgacaagggt
gacacgggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaacacctggagagagaggagaaaagggagagcaggggaatccagga
gatattggtcaacgaggagtgcctggtgaacaaggctttgcgggactgcccggaccacag
ggacctaaaggtgacattggccctaaaggggagactgggagacaaggagagcctggtcct
ccaggattgcagggtacacagggtacccgtggactgcctggcaatgtgggcatccctgga
accattggaccacctggaatagctggacagagaggagagaggggagagatggggaaggag
ggtcgtggtggccccccaggccctcctggagatacaggcatacaaggaccccctggccta
cccgggaagggcaaggacggacagaatggtgatcctggacagcagggaattgaaggacag
cccggccagaagggccaacccggatcccagggacttcagggggttccagggaacaggggt
cctccaggagaaggcaaagttggacccccgggaccttcagggccaaatggtgcagttgga
ccggcgggcatgagaggtctgtcaggcgtcgctggtacacagggacctgctggacacaat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcggatttgaatctgaaggatgtgtgttcagactgcccagccggagccccgggacag
cctggtctgccagggacaccaggggacaagggacaagctggacccccagggaagaatgga
caggacgggtaccaaggccaggcaggctcagccggaacctctggacccccaggagctaac
ggagaaaagggtgtgaaaggtgatagaggaccccaaggagggcctggagacaaaggtgaa
ataggccacaccggaccccctggccaccccggtgctgctggcatcatggggaatcctggt
aacaacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggcaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggcaaa
attggcaaagatggccgccaaggagaacaaggagaatctggtaaacaaggagagccagga
ccacagggacaacccggactcaggggaatgcctggcttcaagggtcacagaggagagcct
ggaccaccagggtcaaagggtgaagatggaaaggaaggccgtagcggaccggagggtaaa
cctggccaagacggtaatattggaccacttggaccagagggcctttctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagcccggagcccctggtactcct
ggtcccgctggagccaagggagaccctgggaacccaggattaccaggctttagtggtcca
aagggacctttgggtcctactggtcctgtcggcccagagggaaaacagggtatgtcaggc
agagcaggagaacgtggagtcaaaggagagcggggcgactcaggtgggaagggagataag
ggatctgttggagatccaggtatgcctggtaacccggggcccccaggccgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggacttaccgggcctcaggga
acacctggaaaccccggacaacctggaccacgaggagagtcaacatcactggaaacaatg
agaaggctgatccaggaggaactagctaaagcgttagatgacaaaatggcgtacctgatg
gcccagatccagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagacgggagccacggtcgccccggacccccaggggagcctggcatgccaggg
cagaatggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaagacggggttggacagagaggagagattggaccatcaggtcctata
ggtccagcaggtataccaggctatggtaaggacgggcagcccggggcggctggagctcag
ggagaaccagggaatcctggcccccatggccagccaggccccagcggacccccaggacag
tgtgacccctcccagtgtgcctactacgctagtctgggatcacgaccccacaccaagaac
gtcaaggggacttaa
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