Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373587
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Entry
139373587 CDS
T10872
Name
(RefSeq) DNA topoisomerase 2-beta-like isoform X1
KO
K03164
DNA topoisomerase II [EC:
5.6.2.2
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139373587
03036 Chromosome and associated proteins [BR:
ocla03036
]
139373587
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
139373587
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Topoisomerases
139373587
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromosome condensation proteins
Other regulators of chromosome condensation
139373587
Centrosome formation proteins
Centriole proteins
139373587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
TOPRIM_C
DNA_gyraseB
DTHCT
HATPase_c
Toprim
Microp_apicomplexa_20
Motif
Other DBs
NCBI-GeneID:
139373587
NCBI-ProteinID:
XP_070970355
LinkDB
All DBs
Position
18:complement(48243149..48278323)
Genome browser
AA seq
1670 aa
AA seq
DB search
MSNGAAGSGGLTWVTLFDKKNAAKKREEEAAAAAAAANGRGDGGKAEGGGGGAKKKGGDK
MSVERVYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDLGMNLREITYVPGLYKIFDE
ILVNAADNKQRDKSMSTIKISIDPESNTITIWNNGKGIPVVEHKDEKMYVPALIFGHLLT
SSNYDDEQKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWQNNMGKTSDSKIK
FFDGDDFTCVTFQPDLSKFKMEKLDKDIVALLTKRAYDIAGSCKGVKVMLNGKKLPVTGF
RSYVDLYVKDKLDEVGVALKVVNESVNERWEVCLTMSEKGFQQISFVNSIATTKGGRHID
YVVDQIVAKLIEVVKKKNKAGVSVKPFQVKNHIWVFVNALIENPTFDSQTKENMTLQTKS
FGSKCPLSEKFIRAATNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDA
GGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEI
NNIIKIVGLQYKKSYEDPESLRSLRYGKIMIMTDQDQDGSHIKGLLINFFHHNWPSLLKH
TFLEEFITPIVKVNKNKQEHAFYSIPEFDEWKKQTVNFKTWHIKYYKGLGTSTSKEAKEY
FADMEKHRIMFRYAGTEDDAAITLAFSKKKTDDRKEWLTNFMEDRRQRRMHGLPEQYLYG
TQAKHLSYNDFINKELILFSNSDNERSIPSLVDGLKPGQRKVLFTCMKRNDKREVKVAQL
AGSVAEMSAYHHGEQSLLMTIVNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIF
TMLSPLAKMLFPAVDSSLLKFLFDDNQKVEPEWYIPILPLVLVNGAEGIGTGWACKIPNY
DHREIVNNLYRMLNMQDPLPMLPSYKNFKGVIHELGQNQYMVSGEISVLDKNTIEITELP
VRTWTQAYKESVLEPMLQGTEKTPALINDYKEYHTDQTVKFVVRMSEEKLAQAEAAGLHK
VFKLQSSLTCNSMVLFDHMGCLKRYDSVQDILKEFFELRLHYYKLRKDWLVGSLGAEASK
LSNQARFVLEKIEGKITIENKSKRELIRMLVQKGFESDPVAAWTKAQEKALEEDDHDGNN
SDSSVDSGSSSGPNFNYILNMPLWCLSKEKVDELLRQRDIKKGELNELQRKSPEDLWKED
LAVFIEELDKIEAQEQADICAGRGTKLVKGKVGKPKVKKLHLEETLPSLYGRRVVPTITQ
AMKTDASKKMTKKKKGDADLVMKLEFDDEMGVLGSDGGTGENSLNSSSNTPAPTPAKPKA
PRVKREKKEPGTPRARKPPAPKGSSGKKVKKRNPWSEDESKSESDLEDSEPVVIPRDTKS
QRASAVKPKYTFDFSEEEDGGEEEEEDDEDAASSPVRPCKDDFTASSETKDRYNDHSAND
EDDEDIFPPPKQTTTTVSPAKKKEPESIFSSSKSAFSSEKSNDSDDLKLDSDEEDKAFSS
YSSSSAFDKPVPAKKGQEAARSQQDAQYSAKKLSDAALKPRKAPTPKTPPKQKLDTSVWD
SDSDTGSKKPSPALKGKSGGRKRKQSGSEEDDFSPKKTPGKAPKTPASRKPSKKVAVTPP
PMSDDDDVDSNRFSQSSVASRERPGRGRAKKEVKYFAESGSDDDQYDMFE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacggcgcagcaggaagcgggggtctgacttgggtgaccctctttgataagaag
aatgctgccaaaaagagggaggaggaggcagccgcggcggcggcagctgcgaacggcagg
ggtgatgggggcaaggcggagggaggaggaggaggagccaagaagaagggaggagataag
atgtcagtggagagggtgtaccagaagaagacccagctggagcacatcctactgaggcca
gacacctacatcggctctgtggaacctgtcacccagcaaatgtgggttttcgatgaagac
cttgggatgaatctacgagaaatcacttatgtccctggattatacaaaatctttgatgaa
attcttgtcaacgcagctgacaacaaacagcgggataagagcatgtcaaccataaagatc
tccattgatcctgagtccaacaccatcaccatctggaacaatggtaaaggcatccctgtg
gtggaacacaaagatgagaagatgtatgttcccgctctcatcttcggacacctcctcacc
tccagtaactacgacgacgagcagaagaaagtcacaggtggaaggaacgggtacggtgct
aaactctgcaacatcttcagcacaaagttcacagtggaaaccgcctgcaaggagtacaaa
cacagcttcaaacagacttggcagaacaacatggggaagacgagcgactccaagatcaag
ttctttgacggggatgacttcacgtgcgtgaccttccagccggacctgtccaagttcaag
atggagaagctggacaaggacatcgtggctctgctcaccaagagggcttacgacatcgct
gggtcctgcaagggcgtcaaagtcatgctcaacgggaagaaactccctgtgacagggttc
cgcagctatgtggacctgtacgtgaaggacaagctagacgaggtgggcgtggctttgaag
gtggtcaacgagtcggtcaacgagcgctgggaggtctgtctcactatgagtgagaaggga
ttccaacagatcagcttcgtcaacagtatcgccaccaccaagggtggcagacacattgat
tatgtggtggaccagatcgtagccaagctgatagaagtggtgaagaagaagaacaaagct
ggtgtctcagtcaaacccttccaggtgaagaaccacatctgggtgtttgtgaatgcgttg
atcgagaacccgacctttgactcccagaccaaggagaacatgaccctccagaccaagagc
tttggttctaagtgtcctctgtctgagaagttcatcagagcagcgaccaactgtggcatc
gtggagagtatcctgaactgggtgaagttcaaggcccagacacaactcaacaagaagtgt
tcttcagtgaagtacagcaagattaaaggcatccccaagcttgacgacgccaacgatgct
ggtggtaaacactcgtcagaatgcactctgatcctgactgagggagactcggccaagtcc
ttggccgtctccggccttggtgtcattgggcgagatcgctatggtgtcttcccactacga
ggaaaaattctgaacgtacgagaggccacacacaaacagatcatggagaacgcagagatc
aacaacatcatcaagatcgtgggtctgcagtacaagaagagctacgaggacccagagtct
ctgagatccctacgctacggcaagatcatgatcatgaccgatcaggatcaagatggctcc
catatcaagggtttgctcatcaatttcttccatcacaactggccatccctgctcaaacac
accttcctggaggagttcatcacgcccatcgtcaaagtgaacaagaataaacaggagcat
gctttctacagcattccagagtttgacgaatggaagaaacagacggtcaactttaaaacc
tggcatataaagtactacaaaggtttgggtaccagcacaagcaaggaggccaaggagtac
tttgcagacatggagaaacaccggatcatgtttagatacgccgggacagaggacgacgct
gccatcacactggcgttcagtaagaagaagactgacgacaggaaggagtggctcaccaac
ttcatggaggacaggagacagaggaggatgcacggcctgccagagcaatacctgtacggc
acgcaggcgaaacacctgtcctacaacgacttcatcaacaaagaactcatcctcttctcc
aactctgacaacgagagatccatcccatccttagtggacggtctgaagccaggtcagaga
aaggtactcttcacctgtatgaagaggaatgataagagggaggtgaaggtggctcagctg
gctggttcagtggcagagatgtctgcctaccatcatggagagcaatccctgttgatgaca
attgtgaacttggcccagaactttgtgggcagcaacaacgtgaacatcctgcagccgctg
ggtcagtttggtacccgcatcaacgggggcaaggatgctgccagcccccgttacatcttc
accatgctcagtcccctggccaagatgttgttcccagcggtggactccagcctgctgaag
ttcctgtttgatgacaaccagaaggtggagccagagtggtacatccccatcctccctttg
gtgctggtgaacggggccgagggcatcgggacgggctgggcgtgcaagatccccaactac
gaccacagagagatagtcaacaacctgtaccgcatgctcaacatgcaggaccctctgccc
atgctgcccagctataagaactttaaaggagtgatccatgagttgggtcagaaccagtac
atggtcagtggcgagatctctgtcctggacaagaacaccattgagatcactgagctgccc
gttcgcacctggacacaggcctacaaggagtcggtactagagcccatgctccaggggaca
gagaagactccagctctgattaatgactataaggagtaccacacggaccaaaccgtcaag
tttgtagtccgtatgtcagaggagaagctggcccaggcagaggctgctggactacacaaa
gtcttcaagctacagtccagcctcacctgcaactccatggtgttgtttgaccacatgggc
tgtctgaagaggtatgactcggtccaggacattctcaaggagttctttgagctgcggttg
cactactacaagctgaggaaggattggcttgtggggagcctgggggcggaggcttccaaa
ctgtccaatcaggcaagatttgtgctggagaagatcgaaggaaagatcacaatcgagaac
aagtctaagagggaactgatcaggatgctggtgcagaaaggatttgagtcagacccggtg
gcggcatggaccaaggcacaggaaaaggctctggaggaggacgatcatgatggtaacaac
agtgacagctctgtggactctgggtcgtcgtcgggaccaaacttcaactacatcctcaac
atgcctctgtggtgcctgtccaaggagaaggtggacgagctgctccgacagagagacatc
aagaaaggagagttgaatgagctgcagaggaagtctcctgaggacctgtggaaggaggac
ctggctgtcttcattgaggaactggataaaatcgaggcccaggagcaggcagacatatgt
gcaggtagaggcaccaagctggtgaagggcaaggtgggcaagcccaaggtgaagaaacta
cacctggaggaaacgttaccctcgctgtacggccgtagggtcgtacccaccatcacacag
gccatgaagactgacgcctccaagaagatgaccaagaagaagaagggtgatgcggacctg
gtgatgaagctggagtttgatgatgagatgggagtactgggatcagacggaggaacaggg
gagaactccctcaactcctcctctaatacaccagccccaaccccagccaagcccaaggcc
ccccgggtcaaacgggagaagaaggagccaggtactccaagagccaggaaacccccagca
cccaaaggatcgtctggtaagaaggtgaagaagcgtaacccctggtcggaggacgagtcc
aaatcagagagcgacctggaggacagtgaacctgtagtcattccccgagacaccaagtca
caacgggcctcagcggtcaagcccaagtacacctttgatttcagtgaggaagaggatgga
ggagaggaagaggaggaggatgatgaagatgctgcgtcctcgcccgtccggccctgcaaa
gacgacttcactgcctcctccgagactaaagaccgatacaacgaccacagcgccaatgac
gaggatgatgaagatatcttccccccgcccaaacagacaaccaccaccgtctcaccagca
aagaagaaggaaccagagagtatattctcctcctccaaatcagccttctcctctgaaaag
agcaatgacagtgacgatctgaagttggacagtgacgaggaagacaaggccttctcctcc
tactccagcagctctgccttcgacaaacctgtcccagctaagaaaggacaagaagcagcc
cggtctcaacaagacgcacaatactcagctaagaagctgtcggatgcagcgctcaaaccc
aggaaagcaccaacgcccaaaacgccaccaaaacagaagcttgacacgtctgtctgggac
tctgactccgataccggctccaagaagccttcaccagcactcaaaggtaaaagtggaggg
aggaagaggaagcagtctggatctgaagaggatgatttcagtcccaagaagacacctggg
aaagcacccaaaacccctgccagcaggaagccatcaaagaaagtagccgtgaccccgccc
cccatgtcagatgatgatgatgtggactccaaccgtttcagccaatccagcgtggcgtcc
cgagaacgaccgggcagaggcagggccaagaaggaagtgaagtactttgctgagtcaggg
tcagacgatgatcagtacgacatgtttgagtag
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integrated database retrieval system
