Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373595
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Entry
139373595 CDS
T10872
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139373595
04081 Hormone signaling
139373595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139373595
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139373595
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139373595
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
139373595
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CpXC
Motif
Other DBs
NCBI-GeneID:
139373595
NCBI-ProteinID:
XP_070970375
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Position
18:complement(47811987..47966584)
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AA seq
511 aa
AA seq
DB search
MNYCMPDMYEMPHGVGGGYPMQGGGEYCMYGGDGPGGYGHCEPQPMHQIHPPCMEQAWPP
SQPYACSYPGPNPVFKSEYCTMEVPLSHYNHQPDYYSEGKPDFSHMQWMQEVNKKGYIPS
YLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCVIDKVTRN
QCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKDELQKTVWDRPEPSQEEW
DLIRMVTEAHMSTNAQGNHWKQKRKFLVEEAMLLNEITCNLFYTSDQSAVGVKETKPEDI
GQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM
EIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFHLDDSEV
ALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRM
IGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaactactgcatgcctgacatgtatgagatgcctcatggcgtaggcggtggctacccg
atgcagggcggtggggagtactgcatgtatggaggtgatggtcccgggggttacgggcac
tgtgagccccagcccatgcaccagatccaccctccctgcatggagcaggcttggcccccc
agccagccctacgcctgctcctacccaggacccaaccctgtgttcaaaagtgaatactgc
accatggaagtgcctctcagccactacaaccaccagcccgactactattctgaggggaag
cctgacttctcccacatgcagtggatgcaagaggtcaacaagaaagggtacatccccagt
tacctggacaaggacgagttatgtgtagtatgtggggataaagctacaggatatcactat
cgctgtatcacctgtgaaggatgcaagggtttcttccggcggacaatccagaagaacctg
aacccgacgtacgcttgtaagtacgaggcaaagtgcgtcatcgataaggtgaccaggaac
cagtgccaggaatgccgcttcaagaagtgcatcgctgtcggcatggcaacagacttggtg
ctggacgacagcaagcggctcgccaagcggaagttgatcgaggagaaccgtgagcggcgg
cggaaggatgagctccagaagacggtgtgggaccggcctgagccgtcccaggaggagtgg
gacctgatccgcatggtcaccgaggcccacatgtcaactaacgcccagggcaaccactgg
aaacagaaacgcaagttcttggtcgaggaagcaatgctacttaatgaaataacatgtaat
ttattctatacttctgaccagagtgcagtgggggtgaaggaaaccaagcctgaggacatt
ggtcaagcaccggtcataaatgcacctgaagggagcaaagtggacattgaagccttcagt
cagtttacaaaaattatcacccccgccattacccgagtggtggactttgccaaaaagctg
cctatgttctgtgagctgccttgtgaagaccagattatcctattgaaaggctgctgcatg
gagatcatgtctttacgggcggccgttcgctatgaccccgagagcgagacgctgacactt
aacggggagatggccgtgacccgcggccagctgaagaacggaggcctgggtgtggtgtcg
gatgccatctttgatttgggcgtgtcgctgtcgtcgttccacctggacgactctgaggtc
gctctgctacaggccgtcatcctcctgtcctccgaccgtccggggctgaccagcgtggag
cgtattgagcgctgtcaagaggagttccttctggcctttgaacattacatcaactaccgc
aaacacaaggtggcgcaattctggcccaagctgctgatgaaggtgacggacctgcggatg
atcggggcgtgccacgcctcccgcttcctgcatatgaaggtggagtgccccaacgaactc
ttccccccactcttcctggaggtttttgaggattga
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