Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373642
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Entry
139373642 CDS
T10872
Name
(RefSeq) syndecan-3-like isoform X1
KO
K16337
syndecan 3
Organism
ocla
Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139373642
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139373642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139373642
Proteoglycans [BR:
ocla00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
139373642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
DUF677
Trep_Strep
Motif
Other DBs
NCBI-GeneID:
139373642
NCBI-ProteinID:
XP_070970474
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All DBs
Position
18:complement(50961762..51002986)
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AA seq
452 aa
AA seq
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MKLPPCLMTILAALLAHSALGQTWVPSIDLEGSSGDEFYDDEDLFSGSGSGFPEMKVNPT
VVGVSFSTEEPLPLSTTQATGPAPSAPPAAEPNPNPDALPTPLPTEGEGESGIEWERGRE
RERERERERVREMERERERERERDREREREKERERERERERQREIERERERERERARAAQ
TTISPRGPAAIPMATTSTATPLAESVAPSSGVQDLVTTEEEDEDVYLSPDPTTSMPMETT
TEEEEEEEEVTTTDTETTPLPKTTAPPTTIGPALAERSSSAPFRPSVLVTTPIKAAPTER
STRPQQPSTTMNNELGVNGPSGDFEIREEDRRQGNEVVGRGLGMETGAEPDLIGNTINTG
SSAAQLPQKNILERKEVLIAILIACLLAVVFADFVVIAVIVGGVVGALFAAFLVMLLVYR
MKKKDEGSYTLEEPKQATVTYQKADKQEEFYA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccgtgtctgatgacgatcctcgcggcgcttctcgctcactccgcgctg
ggtcagacctgggttccgtctatagatctagaaggttcttctggagatgagttctatgat
gatgaagacctcttctcaggctctggatctggctttccagagatgaaggtcaaccctaca
gtggtgggtgtgtctttcagcactgaggagccccttcccctttccaccacccaggctact
ggccccgccccctcagccccacctgcagccgagcccaatcccaaccccgatgctctcccc
accccactacccactgagggagagggggagagtgggatagagtgggagagagggagggag
agagagagggagagggaaagagagagagtaagggagatggagcgggagagagaacgagag
cgggagagggatagagagagggagagagaaaaggagagggagagagaaagagagagagag
aggcaacgggaaatagagagggaacgagaaagagaacgtgaaagagcgagagccgcccag
accaccatctcaccccgtggcccggcggctattcccatggcgaccaccagcacagcgacg
cctctggcggagagtgtagcaccctctagtggcgtgcaggacctggtcaccacagaagaa
gaggacgaggatgtctacctgtccccagaccccaccaccagtatgcctatggagaccacc
acggaagaagaagaagaagaggaagaagtgaccactacagatacagagaccacacccctc
ccaaagacaacagctccacccactacgattggcccagctctagctgagaggtctagctcc
gccccctttaggcccagtgttctggtgaccacgcctattaaagccgcacccacagagagg
agcacacgcccacagcagccttctacgacaatgaataatgaattaggggttaatggaccc
agcggagactttgagatccgggaggaggaccgtcgccagggcaacgaggttgttggtcgt
ggccttggcatggagactggggcagaacctgatctgattggcaacacaattaacacagga
agttctgccgctcaacttcctcagaagaacatcttggagaggaaggaggttctgatagcc
attctgattgcttgcctgctggcggtggttttcgctgacttcgtggtgatcgcggtgata
gtggggggcgtggtgggggccctgtttgcagcgttcctggtcatgctgctggtgtacagg
atgaagaagaaagatgaaggcagctacacactggaggaacccaagcaagccaccgtcacc
taccagaaagctgacaaacaggaggagttctacgcataa
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