Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373818
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Entry
139373818 CDS
T10872
Name
(RefSeq) zinc finger transcription factor Trps1-like
KO
K22040
atypical GATA-binding protein TRPS1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139373818
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
139373818
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Znf_C2H2_Trps1_4th
zf-C2H2_Trps1_3rd
zf-C2H2_Trps1_1st
zf-C2H2_Trps1_2nd
zf-C2H2_Trps1_5th
GATA
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
139373818
NCBI-ProteinID:
XP_070970959
LinkDB
All DBs
Position
18:complement(62449148..62668562)
Genome browser
AA seq
1592 aa
AA seq
DB search
MLSRDMVRKKNPPLRSFGGEEEGEGEALAAEATGPDSEDSAGSRASEPNGADGLLPAELG
RAHVPVPDEQEDSSSSPGSVSGSIKRDGGGRGGGGVGTAATVNTDRPVFNYPSHKKGGNV
ASFPCHEVTDSDLPALPSWAGPDGAVSLSPLRSEPDEGDGRQARSLAGELLLGKAGERGG
GERVGVREGLLLAARGRGVIVQGVTSNGEDKDTSYSPTGGTSVHQDGVEGSGYPLLRPLH
PHRGAGEGVENITPSPLGAETGVAPPCSPKLQDFKCNICGYGYYGNDPTDLVKHYRKYHL
GLHNRTRQDAELDTKILALHNMVGFSSQSQHAKDTTRPPSYTALTGAPQDSTGSPRMLLN
GTYDVQVTLGDTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGSSSVELEQHFLSAHPNKMK
SQPPLLPNDDKPSEGKGNDVTRGGGVEGAEPGKWENRVAVRAEDDSVAGYSVPIHATDSP
GWTGADGGATDSPGWTGADARATDSPGWTGADGRATDSPGWTGADGGATAVAYYWCKYCN
FSCESPSSHRLLEHYERRHRQPGGGRGGTREGSPAKRERRSSKSRDGERDPHSRRKDKTG
TSDSMGATDPETVVTSYNCQFCDFRYSMNHGPEVIVVAPLLRHYQQAHSIHKCTIKHCPF
CPRGLCSPEKHLGEISFPFACRKSACSHCVLLFLQLSPQGSSPTSRPSVTHLCDQCPYAT
SDIDLLLLHYDSAHATHGVLEVKPEQEGAETGRYPHGEHSCTKCHFITDVEEEIFRHYRR
VHGCCRCRHCSFTASDTLTLLDHFNTAHCKETSASSSHPSASFVTINGCSATTPSTLSIK
EESKGDLKLYSLVPPESRAAEAGPGAEGVKSEALDEKEAQGSKGWMEAREAQVQAHTAGL
VWVPKERARDILRGSPAQFPQGALSLLNAVAASQEHHHQQQKGVSVVLRDSPGLVFSLGG
VDTKAFFPGQTPGGADKPGHLAQQYSSPTDGKAKEESQSLLRRRRGSGVFCANCLTTKTS
LWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPDPLPSEPVGS
KQRRVSSEERLNPDPLPSEPVGSKQRRVSSEERLNGSPLERRPGEDGPGSEGMPVPRKGE
PQNSLGQYEACGSSGFKGHPSPRSTHSFLVSQTLEIHKRMPPLHIHNKNPAEGGAEGNGV
GSAGVHHTGLEGKGSLSSERGSPIEKYMRPSKQASYSPPGSPIEKYQYPFFSLPFIHNDL
QSESDWMRFWTKYKMSVPGNPQYLGHMPGLPNPCQSFVPYHTFSLPSHFPLPPSAGPESD
IPLDLAIKHSKPSANGSTASAFTVKERSSGALPTVTAGKEDEKHREQQERREEKVDEGAS
PQPFPPPDVAAKPERVNEGTQDELTSKERVDQGTQDELTSKERRVDEGTQDELTSKERVD
QGTQDELTSKERVDQGTQDELTSKERVDQGTQDELTSKERVDQGTQDELTSKERVDQGTQ
DELTSKCIHCGILFLDEVMHALHMSCHADGGPFQCSICLHACADKYDFTTHIQRGLHLPT
VEAEANAEADAEADAEADAEADAEADAPKDCV
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcagagatatggtgaggaaaaagaacccccctttgagaagcttcggcggtgag
gaagaaggagaaggtgaggctctggccgcggaggccaccgggccagatagtgaggacagt
gccgggagccgggcctcagagcccaacggtgccgacgggctgctgccggccgaactaggt
cgggcccacgtgccagtcccagacgagcaggaggactcctcttcctccccgggctccgtc
tcaggctccatcaaacgggacggaggagggaggggcggcggaggagtgggaacagcggcg
acagtaaacaccgacaggcctgtctttaattaccctagccacaagaagggaggaaatgta
gcgtccttcccctgccacgaggtgacagactcagatctgccggcgctcccatcctgggcc
gggcccgacggggctgtgtctctgtctcctctcagatcagaaccagatgagggggacggg
agacaggcacgcagcttggcgggggagctgctgctggggaaggccggggagagaggaggg
ggagaaagggtgggtgtcagggaggggttgctgctggccgcccgagggaggggtgtcatc
gtccagggcgtcaccagtaatggggaggacaaggacacctcctacagccccacagggggg
acttcagtccaccaggatggggtggagggctctggataccccttgctacgccccctccac
ccacataggggggcaggcgagggggtcgagaacatcacgcccagccccctgggggccgag
acaggggtagccccgccctgctctcccaaactgcaggacttcaagtgcaacatctgtggg
tacggttactacgggaacgaccccacggacctggtcaagcactatcggaagtaccatctg
ggcctgcacaaccgcacacggcaggacgcggagctggacactaagatactggccctgcac
aacatggtgggcttctcctcacagagccaacacgccaaagacactacacggcccccgtcc
tacaccgccctgaccggggcgccacaggactctacagggtcaccacgcatgttacttaac
ggcacctatgacgtacaggtgacgctgggagataccttcatcggaatcgggaggaagact
ccggactgtcagggaaacaccaagtacttccgctgcaagttctgtaacttcacctacatg
ggaagctcctcagtggagctggagcaacacttcctgtctgcccaccccaacaagatgaag
tcccagcccccgctgctgccgaacgacgacaagccctcggaagggaaggggaacgatgtg
acacggggtggtggcgtggagggggcggaaccgggaaagtgggagaaccgggtggcggtc
cgtgcggaggacgactcggtggctggctactccgtccccatccacgccacagactcgccg
ggctggacgggggccgacggcggggccacagactcacctggctggacgggagccgacgcc
agagccacagactcacctggctggacgggggccgacggcagggccaccgactcacctggc
tggacgggggccgacggcggcgccacagcggtggcctattactggtgtaagtactgcaac
ttcagctgtgagtcgcccagctcacatcgcctcctggagcattatgagaggagacacaga
caacctggaggaggaagaggggggaccagggagggcagcccagccaagagggagcgaagg
agcagcaaatccagggacggagagagagacccccacagccggaggaaagacaagacagga
acgagtgactcgatgggcgcaacggacccggagacggtggtgaccagctacaactgccag
ttctgtgacttccgctactccatgaaccacgggcctgaggttattgtggtggcgcctctg
ctccgccactaccagcaggcccacagcatccacaaatgcaccatcaagcactgcccgttc
tgcccgcgtggcctctgcagccctgagaagcacctgggggagatctccttcccatttgct
tgcaggaagagcgcatgctcccactgcgtcctccttttcctccagctgtccccccagggt
agctccccaacttccaggcccagcgtcacccacctgtgtgaccagtgtccctacgccacc
agcgacatcgacctgcttctgctgcactacgacagtgcccatgccacccacggcgtgctg
gaggtcaagcccgagcaggagggagctgagacggggaggtaccctcacggggagcactca
tgcaccaagtgccatttcatcacagatgtggaggaggagatcttccgtcactacaggaga
gtccacggctgttgtcgctgccgccactgcagcttcaccgcctccgacaccttgacactg
ctggatcacttcaacacggcccactgcaaagagacctccgcctcctcctcccatccctcc
gcttccttcgtcaccatcaacggctgctccgccacaaccccctccaccctcagcatcaag
gaggagagcaagggcgacctcaagctctacagtctggttcccccagagagccgcgccgcg
gaggcagggcccggggccgaaggggtgaagagcgaggccctggacgagaaggaggcccag
gggtccaagggctggatggaggccagagaggcccaggtccaagcccacacagcaggcctt
gtgtgggtgcctaaggagcgggccagggacatcctgaggggtagtccggcccagttcccc
cagggcgccctgagtctactcaacgccgtggctgcctcccaggagcaccaccaccagcaa
cagaagggggtttcggtggtgctcagggactccccaggcctggtgttcagtctggggggg
gtcgacaccaaggccttctttccaggacagactcccggtggggccgacaaacctgggcat
ctggcgcagcagtactcctcacccaccgatggcaaggccaaggaggagtcccagtcactc
ttacggagacgtcgaggctcgggggtgttctgtgccaactgtctcaccactaagacctct
ctgtggaggaagaatgccaacgggggatatgtgtgcaacgcctgtggcctctatcagaag
ctccactcgactcctcggccgctgaacatcatcaagcagaacaacggcgagcagatcatc
cgccggcgcacgcggaagcgcctcaaccccgaccctctgccctccgaacctgtgggctcc
aagcagcggagggtcagcagcgaggaacgcctcaaccctgaccctctgccctccgaacct
gtgggctccaagcagcggagggtcagcagcgaggagcgcctcaatggcagtcccctggag
cgccggccaggagaggatgggccaggctcggaaggaatgcccgtccctcgtaaaggggag
cctcagaattccctgggccagtacgaggcctgcgggtcctctgggttcaagggtcacccc
agcccccgctccacccactccttcctagttagccaaaccctggagatccacaagcgaatg
cctcctttgcacatacacaacaagaaccctgcagagggaggggcggaggggaacggggtg
ggctcggctggggtccatcacacgggcttggaggggaagggtagcttgtcctccgagagg
ggtagccccatcgagaagtacatgcgtccttccaaacaggccagctactcgccaccgggc
agccccatcgagaagtaccagtacccgttcttcagcctgcccttcatccacaatgacctg
cagagcgagtccgactggatgcgcttctggactaagtacaagatgtctgttccgggcaac
ccacagtacctaggccacatgcctggtctgcccaacccttgccaaagctttgtgccttac
cacacctttagcttgccctcacacttccctctcccgccctccgccggccccgaaagcgac
atccctctcgacctggccatcaaacattccaaaccgtccgccaacggctccaccgcctct
gcctttaccgtcaaggagaggagtagcggcgccttgcccacggtcacggcggggaaggag
gatgagaagcatagagagcagcaggagagaagagaggagaaagtagacgagggggcatcc
ccccagccttttcctcccccagacgttgcagccaagccagagagggtgaacgagggcact
caggatgagctgaccagtaaggagagggtggaccagggcacacaggatgagctgaccagt
aaggagaggagggtggacgagggcactcaggatgagctgaccagtaaggagagggtggac
cagggcactcaggatgagctgaccagtaaggagagggtggaccagggcactcaggatgag
ctgaccagtaaggagagggtggaccagggcactcaggatgagctgaccagtaaggagagg
gtggaccagggcactcaggacgagctgaccagtaaggagagggtggaccagggcactcag
gatgagctgaccagtaagtgcatccactgtggcatcctcttcctggatgaggttatgcac
gccctgcacatgagctgccatgctgacggagggcccttccagtgcagcatctgcctgcat
gcctgcgcagacaagtacgacttcaccacacacatacagagagggcttcacctgccaacc
gttgaggctgaggccaatgctgaggccgatgctgaggccgatgctgaggctgatgctgag
gccgatgctgaggctgatgctccaaaggattgtgtgtga
DBGET
integrated database retrieval system
