Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139373837
Help
Entry
139373837 CDS
T10872
Name
(RefSeq) zinc finger protein 40-like
KO
K09239
human immunodeficiency virus type I enhancer-binding protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
139373837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139373837
NCBI-ProteinID:
XP_070971011
LinkDB
All DBs
Position
18:63685359..63763014
Genome browser
AA seq
2821 aa
AA seq
DB search
MANFQQSPMAAVHSDKIEEAQKELKDPKASAQKGINECGRTSADNIKGLKRKKVVTENQL
KKIPKSPVKKPLQSKTSVATLQGTSSKEAVNSCSNPDSPSRNPASSPSRNRDTEYLRPVA
ESSEGVTSSIDSDRLKQREVSSSKPQSLDPVSGKEGSASGVGESEQLKDRKSGETGCEGD
ATYHTSAPLEVLLKAMESDFSSLAERNTRVPVTSVGKPSQTLSAQFISELNAMPAVHFGL
QTQPGHMQTYFVNKQESYTTMQASTQATALQNSQHATQYFSNREKPVLQMSFSTGPSAAR
THTPIPSGSNSLPKSQPPVVHTCQSLSASVPSTIQVPVTPGYNPVHMATVVNFGLEQMCS
ISPKHQKPKKQGKYVCEYCSRACAKPSVLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKH
KKSHAHAIKLGLVARSDSGSGSLSVESDKAPGTHSDVEESGDSDEESSTADLDPDSSQGS
VAAFSESSLQSAGTTQGNHGDAGDLSAVFETLKPTTSQRSYESKGTAGLPKVVVYPVNVS
PQRADSPRVADCTPEQATAQRQRDFQTAHLRSSITALSSVKEVDCTIPLKDARSEDEDQQ
CRSPPGGGHGQLQRQQATDFSQQQQGKCLLSPRSLGSTDSGYFSRSESADQAMSPPSPFV
KLTPPTDMDVTKNALPNLPAVVATVMNVASVEKPHVVQGQMRPPLVTKALSLEERISKLI
SDNEAVVDDKQLDSVKPRRTSLSRRGSIDSPKSYIFKDSFQFDLKPMARRSSSSSDIPKS
PFTPTENSKPVLLLSVPNQYPPMDCLPITRSNSMPTTPGHSGLPPNVTQQPHILRICQSF
DEKMSSLNDDVFSSAPSNPNPAIHSRTLVRQVAVEHFSTSEVLTSVRSMDEGYHGSSVST
VTMQRSRSFEHAQDPNRKPQQSKGTMYECETCRNRYRKLENFENHKKFYCSELHGPKNKL
MSVRETELDVFQRGMQQPLVPRTTGISGIMDQQQSIRKRRKMKSVGDDDDQSPTDTNPPC
SVSFDSCQLSTASSGRTFSQQSIMVDLLPKSNPPQIPQIQLIAGVTDATESRLSPIRETQ
VNTSGKERGDLQRQGSGTSVIRHTNSLSRPNSFEISESIDRASPVDFLDKDGHSTGKTKA
DATANLSLESYHEKMSIPKCANQGVMENRVDRTLAAVAESCAAVQQSRLVRQNNIPEILV
TEEPDREHDGHSTEQGEKAADTFNWPQRSESLSKLPTEKLPPKKKRIRLAQMEHSSGESS
FESSLSRSLSRDSSLSRCSSVSASFDWDEPFRSESPSRGECANKICELQGLPIAFNTLGV
PGMMRRAASEQISCTQPSVEISCDYRSKSFDCGSGSPSRSLPPNRSMSPMELRKSAQTSS
SPHVPLIERRRGPLVRQMSLKIGPESQQHVGNHAIAVQRLPTVISISQQRPQQMQQTANN
PPIAQPFILHSGETLLQHNEEMVQSINLGSQSQLPQVHGLPHPWHLTSRVQTCQNRQQSA
VNVMISQEDAQSKSADCQDKKSFVPKYQLRCPALRSSKTYSSTQGTQTTMPVLTTPIAKR
MQSVSKSSDVLHNVCVAQPCHQIVGNKTQPIVLPLGLQNIRPSQNQPSAPQLPQILITHE
LMHPSPSVASKGSLYNLHVVDTDTKTVPDMNKDRPPASAGLQVKHSLVSNTQNHFGETRI
APSLGSLHCTQKMAAVTLCPQQEPIASSKRMLSPANSLDIAMEKHQKRAKDEHGAACLTD
GRSVNYLNSNMAEVTRQRKLMLVRQVCATESADSPIETVAPPLQHEKPEDEKNAQTPNNR
ETMTPESAGQDEPSTVVAQLQPSFALTTSLGSHVSSVPANACLKPQDKSEEQKLPPAKSP
IRSSTFHGQVKLASSVSVVNTRDSHRLSFPSLKTTTTFTWCYLMKRKPLHVPQMDQKISA
YSTWAVSPNNPHPLGLPTKVVMSLFNSKQNSKKIHYTEAITTSMKSDILAYSSKLKDVMP
KVLKHQKSLTTENNSKVKPETQVSSESDKDSSASKLEPRRVKIFDGGFKSNEEYVYVRGR
GRGKYICEECGIRCKKPSMLRKHIRTHSDVRPYHCTHCNFSFKTKGNLTKHMKSKAHSKK
CMEMGVEDQDTEDSGDRSQVGSTDRPDSDGEDSEGADDDNEDDNEEEEDDSQAESGLSTN
PSVSASPQHIPSSLQAELPPSSLLAQLSIHHHPAALSLPQPPYSDCHTHDASDTESVPML
SPVSLVKQMSISGGCSSPLPYSPPPHTSGTESVPMMSPVSPCSHMSISGGCSIPLPYSPP
PHTSGTESVPMMSPVSPCRQMSIDYPDFDVPPCPPAQGKSCSKLGQDGTLALSVSDPGVP
VGTDVSTQTSSYSLQTSSYSPLHFPSQRPTQGPGATQGTNTHLFSHLPLHSQQPSHSPYS
MVPVRGIQLVPASLAAYSTFVPIQAGPVQLTIPALSVIHRNTSPLPFPNTSNSPEPDGMV
SPSSPVNQPLVVQEPISSIMPCFPLGQVAGLGKVTGLGQVAGLGQVTGLGQVAGLGQVTG
LGQVTGLGQVTGLGQVTGLGQVAGLPALRASHHTLQFMGLETLTLTSSEGLTSTQMLSQH
GLSLNATLGLQVLAHTSTSQSRTVPHHHTHIPGLQILKIAVPTLIPSLSPLSGLSPLAGP
FERQGSPDAPAAPRTPQPSFQTETEPSVSCLSAASPPPATLRGSLAQELASSCSRSSRSG
PGGSGGSGGSRGSDDTQTSEKKERVTTSLEQPAPASAPSPAPALAPATATALAPAPGSAP
APAPAPAPDRGLEGDNNPPAEGASEPVTPRRQSMLSRQQETENYNDDSASSDDEDRLVIA
T
NT seq
8466 nt
NT seq
+upstream
nt +downstream
nt
atggccaatttccaacaatctccgatggcagctgtccattcagataaaatcgaagaagca
cagaaagaactgaaagatcccaaagccagtgcacagaaagggatcaatgagtgtggtcga
acaagtgcagataacataaagggactgaagaggaaaaaggttgtgacagagaaccagctg
aagaaaatacccaaatctcctgtgaagaagcccttgcagtccaagacctctgtggcaaca
ctccaaggtacctcgtccaaggaggctgtgaactcctgctccaatcccgacagcccctct
cgaaaccctgccagctcaccaagccggaacagagatacggagtaccttcggcctgtggct
gaatcctctgagggagtgacatcatccattgacagtgataggctgaagcagagggaagtg
tcttcctcaaagccacagtctcttgatccggtcagtggtaaagaggggtctgcctctggt
gttggggaatctgagcagctcaaggaccgtaagagtggcgaaactggatgtgaaggtgac
gctacttaccacaccagcgctccacttgaggtcttgctcaaggctatggaatcagatttc
agctccttggcagaaagaaatacacgtgttccagtcacatctgttggaaaaccaagtcaa
accctttctgcccagtttattagtgaattgaatgctatgccagctgtacattttggactc
caaactcagcctggccatatgcaaacttactttgtaaataaacaagagagctacaccacc
atgcaggcctctacccaggctactgccttgcagaattcacagcatgctacacagtatttc
agcaaccgggaaaagcctgttctacaaatgagcttcagtactgggccctccgctgcccgt
actcatacacctattccatctggctccaattccttacccaagagccagccaccggtggtc
cacacatgccagtccctatctgccagtgtccccagtaccattcaagtccctgttacacct
ggttataacccagtccatatggccacagttgtaaactttggtcttgaacagatgtgtagc
atctccccaaagcaccagaagcctaagaagcaggggaagtatgtgtgtgaatactgcagt
cgggcatgtgcaaagcctagtgtgctcctcaagcacatcaggtcccacacaggagaacgt
ccctacccatgtgttacatgtggcttctcattcaagaccaagagcaatctgtacaagcat
aagaaatcccatgctcacgcaataaaactggggcttgtggcacgttccgactctggaagt
gggtccctctccgtggagtctgacaaagcacccggaacacattcagatgtagaggaaagc
ggggacagtgacgaggaaagtagcacagcggacctggaccctgactcgtcacaaggcagt
gttgcagcgttctctgagagcagtttgcagagtgcaggcacaacacaaggcaaccatggg
gatgcaggggacctatcggctgttttcgaaacgcttaaaccaacgacgagtcagaggagc
tacgagtccaaagggacagctggcctcccgaaagtagtcgtctatcctgttaatgtctcg
cctcagcgggcggacagtccaagagtcgcagactgtacccctgagcaggctactgcccaa
aggcaaagggacttccaaacggcacatctaagatccagcatcaccgccctgtcgtccgtg
aaagaggtggattgcacaatccccctgaaggatgcaagaagtgaggatgaggatcaacag
tgtaggtccccaccaggaggcggacatggtcagcttcaaaggcagcaggccacagacttt
tctcagcagcagcagggcaagtgtctgcttagtccccgcagtttaggcagcacagactct
gggtatttctcacgttctgaaagcgcagaccaggccatgagtcccccgagtccctttgta
aagctaaccccaccaacagacatggatgtcaccaaaaatgcacttcctaatctccctgca
gtggttgccactgttatgaatgtggcttccgtggagaagccacatgttgtgcaaggacaa
atgcgtccaccattagtaacaaaagcactctctcttgaagagcggatctcaaagttaata
tcagacaatgaggcagtggttgatgacaaacagctggacagtgtcaaaccaagaaggact
tctctttccaggagaggtagcatagactcccccaaatcttatatatttaaagactctttt
cagtttgaccttaaaccaatggcgagaaggtcaagttccagctcagacatacccaagtcc
ccattcacccctacagaaaactctaagccagtattgctattgtctgttcctaatcagtat
ccaccgatggactgtttaccaataacaagaagtaattctatgcccacaactccagggcac
tcgggtctcccaccaaacgttacccaacaaccccacatactacggatctgccagtctttt
gatgaaaaaatgagttccttaaacgatgatgtgttttcatctgctccctctaacccaaat
ccagcaatacattctcgtacccttgtacggcaagtagcagtggaacatttctccacaagt
gaggtccttacctcagtccgttccatggatgaaggttaccatggttctagcgtttccact
gtgacaatgcaaaggagcaggtcttttgagcatgcacaagacccaaaccgaaagcctcag
cagagcaaaggcacaatgtatgagtgtgagacctgtcgtaaccggtaccgtaaactagaa
aactttgaaaatcacaagaaattctattgttcagaacttcatggtccgaaaaacaagctg
atgtctgtcagagagactgagctggatgtttttcagcgtggcatgcagcagccattagtc
cccagaacaacaggtatttctggcataatggaccaacagcaatcaattagaaaaagaagg
aaaatgaagagtgttggtgacgatgatgaccaatcaccaactgacaccaatcccccatgc
tctgttagttttgattcttgccaactatcaacagccagttcaggtcggacattttctcag
caatctatcatggttgatctactgcctaaaagcaacccaccgcaaatacctcaaatacag
ctaatagcaggagtcacagatgcaacagaatcaagactgtcaccgatcagagaaacccag
gttaacacctctggtaaagaaagaggtgacctacagaggcaaggcagcggtacatcagtt
atcagacataccaactctctaagcaggcccaattcatttgagatctctgaatctattgac
agagcctctccagttgatttcctggacaaagatggccatagcacaggaaaaacaaaggca
gatgctacagccaatctttcattagagagctatcatgaaaagatgtccatacctaaatgt
gccaaccagggagtgatggaaaaccgtgttgaccgcacattagcagcagtggctgagagc
tgcgctgctgtccagcagtctcgcctggttcgccaaaacaacattcctgaaatcctggtc
acagaggaacctgatcgggagcatgacggtcatagcactgagcaaggggagaaggctgca
gatacattcaactggccccagaggagcgagagcctgtccaagctacccacagagaagctt
ccacccaagaagaagagaatccgtctggctcagatggagcactcctctggagaatccagc
ttcgagtcctcactgtctcgaagcctcagcagggacagtagcctgtcaagatgttccagc
gtatcagcctccttcgactgggacgagccattcaggtccgagagcccctccagaggagaa
tgtgccaacaaaatctgtgagcttcaagggctaccaatagccttcaacaccctaggggtc
cctggcatgatgagacgtgctgcctcagaacagatcagttgcactcaaccctcagtggag
atatcttgtgactatcgcagcaagtccttcgactgtggcagtgggtctcccagcaggtct
ctgccacccaacaggtcaatgtcaccaatggaactgcgaaagagtgctcaaacctcctcg
tctccgcatgtacctctcattgaaaggcgaagggggccactggttcgccagatgtcttta
aagattgggccggagagtcagcaacatgtcgggaatcatgccatcgctgtccagaggctc
cccactgtaatctctatatctcagcagaggcctcaacagatgcaacagactgccaacaat
cctcccattgcccaaccttttattttgcattctggagaaactctcctgcagcacaatgaa
gaaatggtgcaaagcattaacctgggcagccaaagtcaactgcctcaagttcatggtctt
ccacacccttggcacctaacatcgagggttcagacatgccaaaatcgccagcaatctgca
gttaatgtcatgatcagccaagaagatgctcagagcaagtctgctgactgtcaagacaag
aaaagctttgtacccaagtaccaactgcggtgtcctgctctgagatcaagcaaaacatac
tcttccacacagggcactcagacaaccatgcccgtcttaacaacacccattgccaagcgg
atgcaaagtgtgtcaaagtcttcagatgttctccacaatgtctgtgtggcacaaccgtgt
catcagattgtagggaataagacacagccgatagtattgcctttaggcctacaaaacatc
cgaccttctcaaaaccagccaagtgctccccaattgccacagatcctgataacccatgag
ctgatgcacccttccccctctgtggccagtaaaggcagcctctacaaccttcatgttgta
gatacggacacaaagactgtaccagatatgaacaaggacaggcctccagcatctgctggc
cttcaagtaaaacacagtttagtttccaatacccagaaccattttggtgaaactcgaata
gctccctccctgggctccttacactgcacccagaaaatggcagctgtgaccctctgtcca
caacaggagcccattgcctcaagcaagagaatgctctcccctgccaatagcttggacatc
gccatggaaaaacatcagaagcgagcaaaggatgaacatggtgcggcctgcctcactgac
ggcaggtccgtcaactacctgaactccaacatggcagaggtgactaggcaacggaagcta
atgctagtccggcaggtgtgcgccactgaatcagcagacagtcccatcgaaactgtggct
cctccactgcaacacgagaaaccagaggatgaaaagaatgcccagactcctaataaccgc
gagactatgacaccagaaagcgccggacaggatgaaccatctactgtagttgctcaatta
cagccaagctttgcattaaccacctctctaggaagtcacgtctcctccgtgccagcgaac
gcctgcctgaagcctcaagacaagagcgaggaacagaaattgccccctgccaagtctccc
attagatcctcgactttccatggacaggtgaaactggcctcatctgtatctgtggtcaac
acacgagacagccaccgcctgtctttccccagcctgaaaactaccaccaccttcacctgg
tgttacctgatgaagaggaagcctctgcatgttccccagatggaccagaagatctcggcc
tactccacctgggcagtgagccccaacaacccccacccactgggtctgcccaccaaggtg
gtgatgtctctcttcaactccaagcagaactcaaagaaaatacactacacagaggccata
acgacaagtatgaaatcagacatcttggcctattcaagcaagctgaaagacgtcatgccg
aaggtcctaaagcatcagaagtctctaacaactgagaataacagcaaagtgaaacctgag
actcaggtgagcagtgaatcagacaaggattcttccgcatccaaactagagccacggaga
gtcaagatatttgatggaggattcaaatctaacgaagagtatgtgtacgtgcgtgggcgg
ggtcgaggtaaatacatctgtgaggagtgtgggatccgctgcaagaagcccagcatgctc
cgtaaacacatccgcacccactctgacgtacggccctatcactgcacccactgcaacttc
tccttcaagactaaagggaatctgaccaagcatatgaagtccaaggcacacagtaagaag
tgtatggagatgggtgtggaggaccaggatacagaagactctggagaccgtagccaggtg
ggcagtacagaccgcccagattcagacggagaggactccgaaggtgctgatgatgacaac
gaagatgataatgaggaagaggaggatgacagccaggctgagtcgggcctgtccaccaac
ccctcggtctcagccagcccccagcacatcccctcctccctccaagctgagctccctccc
agctcccttctggcccagttgtccatccaccaccacccagctgccctgtcactcccccag
cccccttactccgactgccacacccacgatgcctcagatacagaatccgtgcccatgctg
agccccgtctccctggtcaaacagatgtcaatctccggaggctgctccagccccttgccc
tactccccgcccccccacacatctggcacagagtcggtgcccatgatgagccctgtctcg
ccgtgcagtcatatgtccatctccggaggctgctccattcccttgccctactccccgccc
ccccacacatctggcacagagtcggtgcccatgatgagccctgtctcgccgtgcaggcag
atgtccatcgattaccctgactttgacgtgcccccttgtccccccgcacagggcaagagc
tgctccaagctcggccaggatggcactttggccctgtcagtgagtgacccaggtgtccct
gtcgggacagatgtcagcactcagacctcctcctatagcctccagacatcctcctacagc
cccttgcactttccttcccagcgcccgacccaaggaccaggggccacacaggggaccaac
acccacctcttcagccacttgcctctgcactcccagcagccctcacactccccctacagc
atggtccccgtgaggggcatccagctggttcccgctagcctggcagcctattccaccttc
gtgcccatccaggctggccctgtccagctcaccatccccgccttgagcgtcatccaccgg
aacaccagccccctcccattccccaacacctctaactcccctgagcccgatggtatggtg
agtccctcatctcccgtcaaccagcctctggtggtccaggagccaatcagtagtatcatg
ccctgcttcccccttgggcaggtggctgggctggggaaggtgactgggctggggcaggtg
gctgggctggggcaggtgactgggctggggcaggtggctgggctggggcaggtgactggc
ctgggacaggtgactgggctggggcaggtgactgggctggggcaggtgactgggctgggg
caggtggctggtctaccggccctcagggcctcccaccacacgctgcagttcatgggtctg
gagactctgaccctgaccagctcagaaggcctgacctccacccagatgctatcccaacat
ggcctgtcgctcaatgccaccttgggcctgcaggtcctggctcacacctccacctcccag
agcaggacagtcccccaccaccacacccacatccctggcctgcagatcctcaaaatcgcc
gttcccaccctcatcccctccctcagccccctctccggcctcagtcccctcgccggaccc
tttgagaggcagggcagccccgatgccccagcagccccacggaccccacagccctccttt
cagactgaaaccgaaccctcagtcagctgtctgtctgctgcttcccctccccccgccacc
ctgaggggaagtctcgcccaggaattggcatcatcatgcagcagatccagcagatcagga
ccggggggttccgggggttccggaggttccagaggctccgatgacacacagacttcagaa
aagaaagagagggtaacaacatcgctagaacagcccgccccagcctcagctccatcccca
gctccagctctagctccagctacagctacagctctagctccagctccaggctccgctcca
gccccagctccagccccagctcctgacaggggcctggagggggataataatcctccagca
gagggagccagtgagcctgtcacgcctcggaggcagtcgatgctctcacgacagcaggaa
acggaaaactacaatgatgactcagcatccagcgatgatgaggacagactggtcatcgcc
acctga
DBGET
integrated database retrieval system
