KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374173
Entry
139374173         CDS       T10872                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    139374173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139374173
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     139374173
SSDB
Motif
Pfam: Tyr-DNA_phospho Ion_trans_2 Presenilin
Other DBs
NCBI-GeneID: 139374173
NCBI-ProteinID: XP_070971287
LinkDB
Position
19:25350120..25439851
AA seq 952 aa
MSQASQHGKWTLSSSDDDNDDPLPSASNNNSPLLFGSPPPDQHTSSESNHNYPKIGSNFH
QPKHDPDPPPSIEVKPEPKSDTVTAAPPLSIGSEARHAAQASQLKPVKYDSNQSNPFLAG
KRKKDEDSISGWALSDSDDDDKDKGQSSGQKDPPPKRSKPELKKAKVEERPPSPHGRTYY
IDEPDDFFETSVPPVNDTYRFYLNKVTGLEKRYNTGALHIKEILSPLFGTLKESVQFNYC
FDIAWMLQQYPPEFRDKPVLIVHGDKREAKARLLQQAQPYSQVRFCQAKLDIAFGTHHTK
MMLLWYEEGFRVVILTSNMIRADWYQKTQGLWMSPLYLRLPKGSPETAGESPTLFKRDLL
EYLGAYRAPEITDWIQRIREHDLSETRVYLIGSTPGRYLGSDMERWGHLRLRKLLRDHTR
PIPNEEKWPVIGQFSSIGSMGLDKTKWLAGEFQRTLTTLGKSSLRPDPPMHLIYPSVDDV
RTSLEGYPAGGSLPYSIQTAQKQIWLHSYFHRWQAETTGRSHAMPHIKTYMRASPDFTQL
AWFLVTSANLSKAAWGALEKNNTQVMVRSYELGVLYVPSAFSMSTFPVQMDVFPATTPST
SFPVPFDLPPKRYSSKDQPWMWNIPYTQAPDTHGFGMTTPTTVSGKVFLIFYGLIGCAST
ILFFNLFLERIITVLAFVLKSCHDLKRRRQGVMPHDGPRGAPPPGPRDRGRDSLAGWKPS
VYYVMLILCVAAVVISCCASAMYSAVEGWGYLDSLYFCFVAFSTIGFGDMVSSQRVTYDG
NQTAYRLGNFLFILMGVCCIYSLFNVISIVIKQQTLNWLLRRLDIFSYRGCCHCCPAGIA
KRLPPRRNAVMPSGTGHGHSRAQRTVSIETDALNESETDGGRRMSGEMISIRDFLAANKV
NLDLMQKQLSEAATNGIPRPSVSNQNRQNGFSGGVGALGIMNNRLAETSVDR
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgtcacaggcgagtcagcacggaaaatggacactctccagcagcgatgacgacaacgat
gaccctctcccttctgcctcaaacaacaacagccctctgttgtttggcagccccccgcct
gaccaacacacatcttcagaatctaaccacaactaccccaagataggctccaacttccac
caacccaaacatgatcctgatcctccaccttccatagaggtgaaacctgaacctaaatct
gacacagtgactgctgccccccccctctctattggctctgaggccagacatgcagcccag
gccagccaattgaagccagtaaagtatgattccaaccaatccaacccctttctggctggt
aagaggaagaaggatgaggattcaatttccggctgggctctctcagacagtgatgatgac
gataaggataaaggtcaaagttcaggacagaaagacccgccacccaagaggtcgaaaccc
gagctgaagaaggcaaaggtggaggaaaggcctcccagcccccatggcagaacctactac
atagacgaaccagatgacttctttgagactagtgtgcctcctgtcaatgacacatacagg
ttctacctcaacaaggtcacagggctggagaagaggtacaacactggggctctgcacatc
aaagaaatcctctctcctttgttcgggacactgaaggaatctgtgcagttcaactactgc
tttgacattgcctggatgttgcagcagtacccaccggagttcagagacaagcctgtactg
attgtccacggagacaagagagaggccaaggcccgtctgctccagcaagcccagccctac
agtcaagtccgattctgccaggccaaactggatattgctttcggaacacaccacacgaag
atgatgttgctgtggtacgaggaaggcttcagagtggtcattcttacctccaacatgatc
agagcagactggtaccagaaaacacaggggttgtggatgagtcctctgtatttacggtta
cccaaggggagtccagagacagcgggggagtctcccacccttttcaagcgggacctcctg
gagtacctgggggcctatcgtgcccccgaaatcaccgactggattcagaggatcagagag
catgacctgtctgagaccagggtgtatctgataggttccactccagggaggtacttgggc
tcagacatggagaggtggggtcacctgaggttgagaaaactgttgcgcgaccacacacgg
cccatccctaacgaagagaagtggcctgtcattggtcagttctccagcatcggctccatg
gggttggacaagaccaagtggctggcaggggagttccagcgcactctgaccaccctgggc
aaatcgtctcttcgcccagatccccccatgcacttgatctacccgtcagtggacgacgtg
aggaccagtctggaggggtatccagccggtggctctctaccctacagcatccagactgct
cagaaacaaatctggctccacagctacttccatcgctggcaagctgagacgacggggagg
agtcacgccatgccacacatcaagacctacatgagggcttcgccagacttcacacaacta
gcctggttccttgtcacaagtgctaacttgtccaaagcagcgtggggggctctggagaag
aacaacacgcaggtgatggtccggtcatacgaactgggagtcctctatgtgccctctgcc
ttcagcatgagtacctttcccgtccagatggacgtgtttcctgccaccactccctctacc
tcatttcctgtgcccttcgacctgccacccaaacgctactcgagtaaagatcagccatgg
atgtggaacattccctacacccaggctccagacacacacggatttggcatgaccaccccg
accacggtcagtggcaaagtcttcctcatcttctatggcctgatcggctgcgcctccacc
atcctattcttcaacctcttcctggagcgcatcatcaccgtgctcgccttcgtgctcaag
tcatgccacgatctgaagcgccggcgccagggcgtcatgccccacgatggccccaggggg
gcgccaccgccaggacccagagatagaggcagggacagtctggctggatggaagccttct
gtgtactacgtgatgctgattctttgtgtagctgctgtggtgatatcctgctgtgcctcg
gccatgtattcagcggtggaggggtggggctatctggactcgctgtacttctgttttgtg
gcattcagcaccatcgggttcggggacatggtaagcagtcagagggttacgtacgacggg
aaccagacagcctacagactggggaacttcctgtttatattgatgggtgtctgctgtatc
tactcgctgttcaatgtcatatccattgtcatcaagcagcagacactcaactggctgctg
agaaggctggacatcttctcctaccgaggttgctgccactgctgccccgccgggatcgcg
aagagattgcccccgcgccggaatgccgtgatgcccagcggcactggacatggacactct
cgggcgcagcggactgtctctatagaaacggacgcgttgaacgagagtgagacggacgga
ggacggcggatgtcaggggagatgatctccattagggacttcctggcagccaataaggtg
aacctggacctgatgcagaagcagctgtcggaggcagcaaccaatgggatccctcggcct
tccgtctccaaccaaaacagacagaatggtttctctgggggagtaggggcactgggcatc
atgaacaacaggctggctgagactagtgtggatagatga

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