Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374347
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Entry
139374347 CDS
T10872
Name
(RefSeq) platelet-activating factor receptor-like
KO
K04279
platelet-activating factor receptor
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04020
Calcium signaling pathway
ocla04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
139374347
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139374347
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ocla04030
]
139374347
G protein-coupled receptors [BR:
ocla04030
]
Rhodopsin family
Others
Platelet activating factor
139374347
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Motif
Pfam:
7tm_1
7TM_GPCR_Srv
7TM_GPCR_Srx
CitMHS
Bac_export_2
DUF3382
Motif
Other DBs
NCBI-GeneID:
139374347
NCBI-ProteinID:
XP_070971490
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Position
19:54565499..54626604
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AA seq
374 aa
AA seq
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MEMEEDMTVNTTVNISTVGKITFLDSEFRYTLFPVFYGVVFVLGLIANGYVLFVLQRLRN
AKAMSEIRIYMANLTVADLLFVCALPFWIGYYHHRGDWRYGDFLCRVTGAFFFINTYCSI
LFLAAISVNRYWAITCPLDAASSDHWRRGVAVTMVIWVLTLSMSVPYLLETGIQVDDGNV
SRCFEGYHDKTDDEKRTVATTHLIIVGCFILVFFLVVICNLLIARALLTQSPTQHRGSSS
SQLRGVKGQALHMLCAVVGVFVVCFLPHHVVQGPWTLAVLEIKEGWGRMDWGQRTRQWLN
DAHQVTLMLMGLNCLLDPVVYCFATRKFRLYIKDNLKKMGRGKGCSETAITHISMVECKN
VSQRLHSEQQQLKV
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaagaggacatgacagtgaacacgacagtgaacatatcgacagtcggtaaa
ataacctttctggactctgagttccgttacaccctcttcccagtgttttacggtgttgtg
ttcgtccttggtctgatagccaacggttacgtgctgttcgtgctgcagcgcctgcgcaac
gccaaggccatgagcgagatccgcatctacatggccaacctgactgttgccgacctcctc
ttcgtgtgcgccctccccttctggattggctactaccaccaccgcggtgactggcgctac
ggcgacttcctgtgccgcgtcaccggcgcgttcttcttcatcaacacctactgctccatc
ctcttcctcgccgccatcagcgtcaaccgttactgggccatcacgtgcccgctggatgcc
gcctcgtctgaccattggcgccgcggagtggctgtcaccatggtaatctgggtgctcact
ctgtccatgtccgtgccgtacctcttggagacgggcatccaggtggacgacggcaacgtg
tcgcgctgctttgagggctaccacgacaagactgacgacgagaagcggactgtggccacc
acccacctcatcatcgtggggtgcttcatcttggtcttcttcctcgtagtaatctgtaac
ctgctcatcgcccgtgccctgctcacccagtcccctacccagcatcggggctccagttca
tcccagctccggggggtgaagggccaggccctgcatatgctgtgtgccgtggtgggggtg
ttcgtggtgtgcttcctcccacaccacgtggtccagggcccctggactctggctgtactg
gagatcaaggagggctggggcagaatggactggggccagcgaaccaggcagtggcttaac
gacgcccaccaggtcaccttgatgctgatggggctcaactgcctcctggaccctgtggtg
tactgcttcgccaccaggaagttccgcctgtacatcaaggacaatctgaaaaagatgggg
aggggcaaaggatgctcggaaacagccatcacacacatttctatggtggagtgcaagaat
gtgagccagcggctccatagcgaacagcagcagctgaaggtttaa
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