Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374571
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Entry
139374571 CDS
T10872
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030
DNA replication
ocla03410
Base excision repair
ocla03420
Nucleotide excision repair
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139374571
03410 Base excision repair
139374571
03420 Nucleotide excision repair
139374571
03430 Mismatch repair
139374571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139374571
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139374571
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139374571
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139374571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
Rad17
AAA_30
AAA_33
AAA_17
AAA_16
AAA_14
AAA_18
nSTAND3
NPHP3_N
NTPase_1
RNA_helicase
AAA_19
BRCT_2
Motif
Other DBs
NCBI-GeneID:
139374571
NCBI-ProteinID:
XP_070971669
LinkDB
All DBs
Position
19:complement(1557281..1614721)
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AA seq
1180 aa
AA seq
DB search
MDIRRFFVSSKPTAQKPSQDGTLNTEKESTKKKKKQSVSTDEEVKKKKPVTKITSPKVEK
KKKKDNDKKRKRRAVIESDSEEEVVKQKAQKPNPPLPPAPLPPAKKDPVQYVSETDSDSD
NFLSLKKSQAKPQGNGVPKPGKARPRTKEIHRSPPKPTLVPATGKGGMKKSPPAPVTPKS
APPQTKRTPTSVLDYFGSGSVQRSDRKLVASTKRKTLSQDPDESLTDEVIAQQLQMDEDM
ELERQVHEDEEFAKTLAMLDQQPHAKKARKYSGEDLGSATSANKSSANSSHSSTASQSQP
NGRDHNQDVIGPSPKKVPPLVKTSSKLSMMKKREEEEEGGGKTNLSINASVSPKKEFLTP
SSTDRKSKLRTGSVTMVTTPTTLKTSPKKESTSPEESEKKRGNSSAFRSFLNRDGPRALG
SKPIPTGAENCLEGGVFVISGVLESMEREDAKSLIERYGGKVTGNISKRTTYLVMGRDGG
VTKTEKAEGFGTKILDEDGLLELIRSTPGKKSKYLIAAEAENKGFKSRTPDTKTTSRTPK
QSPKTRSMTPSPSKPGSASGRGVRVGDSVTLPGRGTGSGVKRGLDLGGKSQSSSSSATLS
LPSFAGEDFSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAKPAGRG
FGKFTSTKDNGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKQVI
AESLNNTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRIPIICM
CNDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILASNQDI
RQVLHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKGEESGHMTLIDKS
DLFFHDYSLAPLFVQENYIHVKPAAAGGDVKSHLVLLSKTADSICDGDLVDRQIRSKQAW
SLLPTQAIYSSVLPGELMSGYMNCFPSFPSWLGKFSSGNKHSRIIQELASHMSLRTLSSR
QAVSLDYLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPY
AKLDPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVEAEPGGEGQEEQPEEEEEEEGV
AADAMIKLKKAKPSKEPKKEKTTARDSGKGKGKGKGKARK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtatcaagcaaacccacagcacagaaaccatctcaggat
ggaaccctgaacacagagaaggaatccacgaagaagaagaagaagcaatccgtctcaaca
gacgaagaagtgaagaagaagaaacctgtcaccaagatcaccagccccaaggtggagaag
aagaagaagaaggacaatgataaaaagagaaagaggcgcgctgtcattgagtcagactct
gaggaggaggtagtgaagcagaaggcacagaaaccaaaccctcctcttcctccggctcct
cttcctcctgccaagaaagaccctgtgcagtacgtctctgagacagattcagacagcgat
aacttcctgtctctgaagaagtcccaggctaagccccagggtaatggagtgcccaaacca
gggaaggcccgccccaggaccaaagagatccacaggtcccccccgaaacccacccttgtt
cccgccacagggaaaggagggatgaagaagtctcctccagcccccgtcacccctaaatca
gcgcccccgcagaccaaacgcacccccacctctgtcctggactactttggcagtgggagt
gtgcagcgctcggacaggaaactggtggccagtaccaagaggaaaactctctctcaggac
cctgatgagtcgctgactgatgaggtcatcgcccagcagctacagatggacgaggacatg
gagttggagaggcaggtccacgaggacgaggagtttgccaagacgctggccatgttggac
caacaaccacacgccaaaaaggctcgtaaatactctggtgaggatctggggtctgccacg
tcagccaacaaaagcagcgctaactcctcccacagcagcaccgccagccaatcacagccc
aatgggcgggatcacaaccaggacgtgatcggtccgtcccctaaaaaggtcccccctctt
gttaagaccagttccaaactgtccatgatgaagaaaagggaggaggaagaggaaggagga
ggcaagacaaatctgagtatcaatgcgtctgtctctcccaaaaaggagttcctaacccct
tcgagcacagacaggaagtccaagctcagaacaggaagtgtaaccatggtgaccacaccc
acgactcttaaaacctcccccaagaaagagagcaccagtccagaggaatcagagaagaag
cgagggaactcctcagccttccgtagtttcctgaaccgagacggacccagagccctggga
tctaaacccatacccactggagcagagaactgcctggagggaggtgtgtttgtgatctct
ggtgtgttggagagtatggaacgtgaggatgctaagtccctgatagagcgctatggaggg
aaggtgaccggtaacatcagtaagaggacgacatacctggtgatgggcagagatggagga
gtcaccaagactgagaaggcggaggggtttggaacaaagatcctggatgaggatggtctg
ttggagctcatcagaagtacaccagggaagaagtccaagtacctgattgctgccgaggca
gagaacaagggatttaagagcagaacaccggacaccaagaccacctcccgcacccccaaa
cagtcccccaaaactcgctccatgacccccagcccctccaaacctggctcagcgtcgggg
cgaggagtcagggtaggggacagcgtgaccctcccagggaggggtacaggttcaggggtc
aaaagagggctggacttggggggtaagagccaatcatcttcctcctctgccactctgtct
ttgccctcattcgcgggtgaagatttcagtctgctgtgggtggataagtaccgcccccag
aatctgaaggctgtgattggtcagcagggagaccagagccaagccaataagttgcttcgc
tggctgaagaactggcacacccaccatgcagtgggaggggctaaaccagcagggagaggg
tttggtaagttcaccagtactaaggataatggttcgagcttcaaggcagccctgttatct
ggacctcctggcgtgggcaagaccaccacagctgccttggtctgtgaggagctgggctac
agctatgtagagatgaatgccagctgtactcgcagtaagaacagtctgaaacaggtgatc
gctgagtctctgaacaacaccagtatcaacaacttctacacaggttcgtctcagacagtc
agtagtaaacatgttctcatcatggatgagattgatggcatggccggcaacgaagaccgc
ggaggaatacaggagatgataggtctgattaaacagtccaggatccccatcatctgtatg
tgtaatgaccgtaaccaccaaaagatccgctctctggccaactactgctttgacctgcgc
ttccagagaccacgactggagcagatcaagggtgccatgatgtccattgctttcaaagag
ggtctgaaagtcccgcctcctgccctcaacgagatgatcctggcatccaatcaggacatc
cgacaggtcctccacaacctgagcatgtggtcggctaaggacaaggtcatgacctacgac
cgggtcaaagaggacgccaacaatgcacgcaaggacatgaagttgggtccgttcgacgtg
tgtcggaaggtgttctccaagggggaggagtcaggtcacatgacgttgattgacaagtca
gacttgttcttccacgattactccctggcccccctcttcgtccaggagaactacatacat
gttaaacctgctgctgctggtggtgatgtgaagtcccacctggtcctcctcagtaagaca
gctgattctatctgtgatggagacctggtggacagacagatacgttccaaacaggcctgg
tctctactgcccacacaggccatctattccagtgtgttaccaggagagttgatgagtggt
tatatgaactgcttcccctcgtttccctcctggctgggaaagttctcctccggcaataaa
cactcccggatcattcaggagctggcctctcacatgagcctcaggacattaagtagcaga
caggcagtgagcctggactacctcccgtacctccgcatggccctgttgtgtcctcttcag
aggcagggggcggagggggccggtcaggccgtccagctgttagacgactaccacctggtc
agagaggatgtggacagcctcatggagatcagcctctggggggggcagcctgacccctac
gctaaactagaccccaaggtgaaatcagcgttcacgagggcctataaccgggagacccac
ctgacaccgtactccctccaaccaatcaagaagggccgtcgtggcgggggagtggaggca
gaaccgggaggagaagggcaagaggaacagcctgaggaagaggaggaggaggaaggtgtt
gcagctgacgccatgatcaaattgaagaaggccaaaccctccaaggagcccaagaaggag
aagacaacagccagggattctgggaagggaaagggcaaaggcaagggcaaagccaggaag
tga
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