Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374596
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Entry
139374596 CDS
T10872
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139374596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139374596
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139374596
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
139374596
NCBI-ProteinID:
XP_070971714
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Position
19:3616199..3656346
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AA seq
614 aa
AA seq
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MSAEEAADNTTPADASAGDGGDEEEEWLYGDDDERADEEEAKLSAAVSAPIPATESEEAA
TTGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTVGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDTW
KGYCDKQKRLRMGLEVVNISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTTANIYKSS
MNTTRISPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVISE
HSSSDAEQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPGFP
PPSGPPPSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWPPMM
DQSKQWDYYPPGPGPGPGPRREDKREKERERPRERPHEREREREHSPSTMAYNSDEERYR
GYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGGGGGERHRD
RSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPS
DDMGGDQENQDTME
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaacacaaccccggcggacgcgagtgcgggagatggc
ggagacgaggaagaagagtggctctacggagatgatgatgagagagctgatgaagaagag
gccaaactatccgctgctgtcagtgcacctattcctgctactgagtcagaagaggcagct
actacaggcaacggagtggaagctcaggagaaggagccaggagatgatgacgacagcgat
agcgacagcgacgatgatgacgatgatgttcgtgtcaccatcggagacatcaagaccgga
gctccacagtacacaacgtatggagtggctcctgttaacctgaacataaagacagcggga
gccagaccctatggaacagtagggaacaagttaaagggtgtggatctggaggccccggga
aacatcaatggagtcccagtagtggaggtggacatggagacattcgaggagaaaccctgg
aggaaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacgtgg
aagggctactgtgacaagcagaagaggctgaggatgggcctggaggtcgtcaacatctcc
tccaccaccagcaaaatcactgttcagcagggcaggacggggaatgagaaggaagtgagt
ttacccatccacacgtccaaacctgacttccccactacagccaacatctacaagtcatcc
atgaacactaccaggatctcccccccacagtggactgctccccccgtccaggacatgtcc
tactatacgaagaccagtggtacgattgacgtgattggaggagggaccgctaccatcagc
agagtggagggacgacgaagacacaacctggagggaaacaacatccaggtgatttcggaa
cactcgtcgtcggacgctgagcaaaaccccaacaagatgccccccttcttcccccccggg
cccctccccccaaacatccctcctcccccattcctcccccctcctcccaacgtcagccag
gctccccctctcatccccccaccaagaatacctatgaatgtccctcctcctggtttccct
cctcccagcggcccccctccctctctcatccccaccttggacagcagtgggcatccaggt
ggatatgatgttcgtcccgttccaccataccccttccccacaggtggtttccctcctcct
atgacaggtggctaccctcctcctatgccaggtgtggtgtctccatggcctcctatgatg
gaccagtctaaacagtgggactactaccctccaggaccgggaccgggaccaggacccaga
cgggaggacaagagggagaaggagagagagagacccagggagagaccacatgagagggag
agagagcgagagcacagcccctccactatggcttacaacagtgacgaggagcggtaccgt
ggttaccgggagtaccaggcggagcgtggctacagcggcggtgaccgcggaggaggtgac
cgtggaggaggggagcgtggaggcgtagaccgtggaggtgaccgtggagggggggagcgt
ggcggtgaccgtgggagtggtggtgagcgtggtggtggaggcggggagcgccacagagac
aggtcgagccgtgagaaggaggagagacacagagagagaagacacagagagaaggaggag
gggagacacaagtcatcacgcagtagcagcaggaggagacatgatagtgaagaaggagac
ggtcacaggagacacaaacacaagaagagcaagaggagcaaggagggcaaggaacctagt
gatgacatgggaggagaccaggagaaccaggacaccatggagtga
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