Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374612
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Entry
139374612 CDS
T10872
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139374612
04131 Membrane trafficking [BR:
ocla04131
]
139374612
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139374612
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139374612
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
139374612
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
139374612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_GCN1
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
139374612
NCBI-ProteinID:
XP_070971741
LinkDB
All DBs
Position
19:4026235..4164122
Genome browser
AA seq
3255 aa
AA seq
DB search
MATMDKLMKAFESLKSFQQQQGPPTAEETAQKQKKELATTKKDRVAHCLTICENIIAQSL
RTSPEFQKLLGIAMEMFLLCSDDRESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSAAVPKI
MTALGHFANDGEVKVLLKSFVANLKSTSPTIRRTAASSAASVCQHSRRASYFYTWLLNVL
LGLLVPVDEEHPNHLVLGVLLTLRYLMPQLQQQDRTTSLKGSFGVMRKEADLQPTPEQLL
QVYELTLHYSQHGDHNVVTASLELMQQMFRTPPPELLHMLITPGSVPHASVFRRDVERRT
HSGSILEFIAGGGSSCNSPLLLRKQKGKMLSGEEEGLEDDPERAEVTTGAFTASVAGADA
TAQVVDIITQQPRSSQHALQPGDSVDLGGASSEQGTTALGTSGGEGGAGTPESPNDNAAD
EDMLSHSSSGANVTPETADYATPENAEMPDGPLLDPLGDPSLPPSADSSQTTTEGPDSAA
TPSDAAELSRPWLPRVMVEPPFEAPPSPTSTEGPDASDSDSSVYSSSSSSSSSVAAAASS
SSSLSSGADASSSGSSKVLDTSESLYSGMQIGTLQDEEEEGAVPSSHTEPFSQSALALSR
PHLLEGRGHNRQASDSSVDHFIPKEEPAETTELENKPSRIKGPIGHYTDQGAEPLVHCVR
LLSASFLLTGQKNGLVSDKEVRVSVKVLAVSCIGAAAALHPEVFFNSLYLEPLDGETQQE
QQYISDVLCLVAHGDPQVRGAAGVLCGAVIHSALNKTRYNIHTWMTSVHASTGNPLSLVD
LVPVLQNTLKDESSVTCKMACSAVRHCIMTLCSSTLSELGLHLLVDLLTLKDCSYWLVRT
ELLDTLAEIDFRLVNFLEKRTESLHKGEHHYTGLLRLQERVLNGVVIHLLGDEDPRVRHI
AAATVSRLVSVLFYECDQGQADPVVAIARDQSSVYLQLLMHETLPPSHFTVSTITRTYRG
YNLSQGVSDVTVENNLSRVVSAVSHALTSSTSRALTFGCCEALHLLTTTYPACTWSTGWH
CGYVSSTVTHPNRSNLNRSRARSHSLSQPDSGPLEEGKRSLTVGMANMMMSLLSSAWFPL
DLSAHQDALLLAGNLLAATAPQCMCSPWAGEEEGGPVPGKTEEPWAAVGERPLVVLVEQL
FSHILKILNICAHVLDDTPPGPAVKATLPSLANAPSLSPIRRKGKEVAEPSTIPMSPKKG
SETNTGRPADSSGSTANVNKSTTLGSFYHLPTYLKLYDVLKATHTNYKVTLDLHSTNEKF
GGFLRSTLDVLSQLLEMATLHDIGKCVEEILSYLKLCFSREPLMATVCVQQLLKTLFGTN
LASQYEGAQGGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQ
EQDASGWFDVMQKVSNQLRSSITNVTKQRGDKNAIHNHIRLFEPLVIKALKLYTTSTSVA
LQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLVL
LSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKE
LDTQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQM
HLDSPEALGVLNTLFETVAPSSLRPVDMLLKGMFTTPASMANVNTVQLWVSGVLAVLRVL
ISQSTEDIVLSRVHELSLSPLLLSCPTIRRLRDDSSLSSTPPPPLATSATVAPDNQEANG
ERVPPEETFARFLLQLVGVMLDDISTRQVKVDMTEEQHTFYCQQLGTLLMCLIHIFKSGM
FRRITAAATRLLKGEAVLGAGPGVSGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLIIN
YTNYSWWTEVHQTPRRQSLSCTKLLSPHSSGGVEEERPEARLAMCNREIVRRGGLILFCD
YVCQNLHDSEHLTWLIVNHVRDLIDLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNL
TTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETL
QNSLVQLPVEELDRIQEYLQISGLAQRHQRFYSLLDRFRASVAEDTSSPSPPVTSHPLDG
EPPPAPELVTADKEWYVALVMSQCCLRGDGSFLETTELLTKLPPDDLSTIMSCKDFNLSL
LCPCLSLGVQRLTRGQGSLLLETALAVTLDHLSGVTQLLPVPHRSFLPPAKPDSAEPYWD
NLAIVYGEAGLYPRVMSLCRALSQYLLCVGQLPSPLQIPEDKQHLITTFTTMATELVVWR
VLQDSVPLSVDLQGALSCLCLALQQPCVWNTLSTAPYKTQTCSVIHCLRLLITAVAVGPG
DHLLHPGRKRTTGSDGDSDQVHSPNTDNVCERRSCEIMAELVEGLQSVLSLGHHRNSGIP
AFLTPMLRNIIISLSRLPLVNSYTRVPPLVWKLGWSPRPGGEFGTTLPEIPVEFLQEKDV
FREFLYRINTLGWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQLNVLAVQ
AITSLVLSSMTLPTAGNPTVSCLEQQPRNKTLKVLDTRFGRKLSVIRGAVEREIQAMVSK
RDNVHTHHPYHTWDPVPSLSAVSPGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWL
GNNITPLREEEWGEDEEDETDTPAPASLPTSPINSRKHRAGVDIHSCSQFLLELYSQWLL
PGSPSNRRTPVVLISEVVRSLLAVSDLFTERNQFDMMFTTLMELQKSHPAEDEIMNQYLV
PALCKAAAVLGMDKATSEPVCRVLELTLHSTHLPSRMGALHGLLYVLECDLLDDTVKQLV
PAVSDYILSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFTAGVIQMCGVMV
SASEDSTPSVIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMSALGLML
TCMYTAVRTSAESALGSEVMGSEVRGQGSEVTSGPVAFSSGKEKASPGRPAGAVDPQAPD
SESVIVAMERVSVLFDRVRKGLPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQP
YPQFMATVVYKVFQTLHATGQSSMVTDWVLLSLSNFTQRTPVAMAMWSLSCFFISASTSQ
WVSALLPHVISRMGKSEVVDISLFCLVALDFYRHQLDEELDRRAFQSVFQTVASPGNTYQ
QLLDCLQSIHQDTSL
NT seq
9768 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggataaattaatgaaggcctttgaatctctcaagtctttccaacaacaa
cagggaccgccgacggccgaggagacggctcaaaaacagaagaaagagctggccaccacc
aaaaaggacagagtggcccactgcctgaccatatgtgagaacatcatagcccagtctctg
agaacgtctccggagttccagaagcttctgggtatcgccatggagatgttcttgctgtgc
agcgacgacagagagtcggacgtcaggatggtggcagacgagtgcctgaacaaaatcatc
aaagcgctgatggactccaacctgcccagacttcagctggagctctacaaagaaattaaa
aagaacggtgcctctcggagcctgagggctgctctctggaggttcgctgagctagcacac
ctcgtcagaccacagaaatgcagaccgtacctggtgaacctcctcccctgtctgaccagg
atcacgaagagacaggaggagactgtccaggagaccctgtcggctgccgtgcctaagatc
atgactgctctgggacacttcgctaacgacggagaggtcaaggtgttgctgaagtcgttt
gtggccaacctgaagtccacatctcctacgatccgccggacggccgccagctcagcggct
agtgtttgtcaacactcgagacgggcctcctacttctacacctggctgctcaacgtcctg
ctgggtctgttggtccctgtcgatgaggaacatcctaaccacctggtcctgggggtgttg
ttaacccttcgctacctgatgcctcaactacagcaacaggacaggaccaccagcctgaaa
ggaagcttcggagtcatgaggaaggaggcagacttacagcccacgcctgaacagctactg
caagtctatgagttgactctccactacagccagcatggcgaccacaacgtggtgacggcc
tctctggaactgatgcagcagatgttccggactcctcccccggagctactgcacatgctc
attacgcccggcagcgttccgcacgccagcgtgttccgacgggacgtggagagacgcacc
cactccggcagcattctggagttcattgccgggggcgggtcttcctgtaatagtccactc
ctcctcagaaaacagaaaggcaagatgctgtcgggggaggaggaggggttggaggacgac
cctgagagggcagaggtcaccaccggggcctttacagcctctgtcgcgggcgccgacgcc
accgcccaggtggtcgacatcattacccagcagccccgctcatcacagcatgctctgcag
cccggcgactccgtggacctcggtggcgcctcctcggaacaaggaacgactgccctcggg
acctccggcggcgagggaggggcggggactcccgagtcgcccaatgacaacgcagcggac
gaggacatgctcagccacagctccagcggggctaacgttaccccggaaacggccgactac
gccacaccggagaacgcggagatgcccgacgggcccctgctggaccccctgggagacccc
tcgctgcccccgagcgccgactcgtcgcagaccaccacagaagggccagactcggccgcc
actccttcagacgccgctgaactctcgcgtccgtggttgccacgggtgatggtggagccg
ccgtttgaggcccctccctctccgacctccaccgagggtccagacgcgtccgacagcgac
tcttccgtctactcctcctcttcctcctcttcctcctccgtcgctgctgctgcttcttct
tcttcctccctctcttctggcgccgacgcttcctctagcggtagtagcaaggtgttggac
accagtgagagtctgtattcagggatgcagattggaactttacaggatgaggaagaagag
ggagccgtaccttcatcacacactgaacccttctcccagtccgcactggctctgagtaga
ccccacctcctagagggcagaggtcacaacagacaggcgtcagacagcagtgtggatcac
ttcataccaaaggaggagccagcggagaccacagagctggagaacaagccatcgaggata
aagggtccgattggccactacacagaccaaggggcggagcctctggttcactgtgtacga
ctcctctctgcctccttcctgctgactggacagaagaatgggctggtctctgataaagag
gtccgtgtcagtgtgaaggttctagcagtcagctgtatcggagcagcagccgcccttcat
cctgaagtcttcttcaactctctgtacctggaaccactggacggagagacacagcaggag
cagcagtatatcagtgatgtgttgtgtctggttgctcatggagaccctcaggtcagaggt
gctgcaggggtgttgtgtggcgctgttatccactctgctctcaacaagacacgttacaac
atacacacctggatgaccagcgttcacgcctctacaggtaacccgttgtccctggtggat
ctagttcctgtactacagaacactctcaaggacgagtcctctgtcacctgtaagatggcc
tgctctgcagtcaggcattgcatcatgactctttgtagcagtactctgagtgagttgggt
ctgcatctcctggttgacctgctgaccttaaaggactgttcctattggctggtcaggacg
gaactcctggacactctggcagagatagatttccggttggtgaacttcctggagaagaga
acagagagtttacacaaaggagagcatcactacactgggttgctaaggttacaggagaga
gtgttgaatggcgttgtgattcatttgttgggagacgaagaccctcgagtacgacacata
gccgctgctactgtcagcaggctggtcagtgtgttgttctatgagtgtgaccagggtcag
gctgacccggtggtggctatagccagagaccagagctctgtgtatctacagttactgatg
catgagacactaccaccttcacactttactgtctctaccatcaccaggacgtatcgtggt
tataacctgtctcagggagtgtcagacgtcactgtggagaataacttgtcaagagtcgtc
tctgccgtgtcccacgctctcacctcctctacgtcacgggccctcactttcggctgctgt
gaggcgctgcatcttctgaccaccacctacccagcatgcacctggagtacgggctggcac
tgtggttacgtcagctccaccgtcacacaccccaaccgatccaacctcaaccgctcccgg
gcacgctcacacagcctctctcagcccgattcaggcccattagaggaagggaagaggagt
ctaacagtagggatggctaacatgatgatgtctctactgtcctctgcctggtttcctctg
gacctctctgctcaccaagatgctctgctgctggccgggaacctgctcgctgcgacggct
ccacagtgtatgtgtagtccctgggctggggaggaggagggagggccggtccccggtaag
acagaggagccctgggcagcggtgggagagcgccccctggtggtcctggtggaacaactc
ttctctcacatcctcaagatactcaacatctgtgcccacgtgctggacgacacgccgccc
ggacccgctgtcaaggccaccctgccgtccctagccaacgctccctccctcagccccatc
agaaggaaaggcaaggaggtagcagagccaagcaccattcccatgagccctaagaaaggc
agcgagaccaacactggcaggccagcggacagctcggggtccacggctaacgtcaacaag
tccacaaccctgggaagcttctatcatctacccacctacctcaaactgtacgacgtcctc
aaagctacacacaccaactataaggttacgttggacctccacagcaccaacgagaagttc
ggagggttcctgcgttctacgctggacgttctgtctcagctgctagagatggccacgcta
cacgacatcggaaagtgtgtggaagagatcctcagctacctgaaactctgcttctccaga
gaacctctgatggccacggtctgtgttcaacagttattgaagacgttgtttggtaccaac
ctagcctcccagtacgagggggcccagggcggtcctagtcgatcccaggggaaggctctc
cgtctgggctcgtccagcctgagacctggcctctatcactactgcttcatggccccctac
acacacttcacccaggccctggccgacgccagcctcaggaacatggtgcaggctgagcag
gagcaggacgcgtcagggtggtttgatgtaatgcagaaggtgtccaaccagctgagatcc
agtatcaccaacgtgaccaaacagagaggagacaagaatgcgatccacaaccacatccgt
ctgtttgaacctctggtgatcaaggctctgaaactgtacaccacctccacctctgtagcg
ctgcagagacaggtcctagacctgctggcgcagctggtacagctacgagtcaactactgt
ctgctggactcagaccaggtgttcataggttttgtgctgaagcagtttgagtacattgag
gtgggacagttcagagattcggaggcgatcgtccccaacatattcttcttcctggttctg
ttgtcgtacgagcggtaccactccaaacagatcatcagcatcccaaagatcattcaactg
tgtgatggcatcatggctagtgggaggaaggctgtcacacatgccatcccagccctgcag
cctatagtccatgacctgtttgttctgagaggctccaacaaggctgatgctgggaaggag
ctggacacccagaaagaggtggtggtctccatgctgctgagactcatacagtaccaccag
gtgctggagatgttcatcctggtcctccagcagtgtcacaaggagaacgaggacaagtgg
aagagactgtccagacagatcgctgacatcatactgcccatgataggaaaacaacagatg
cacctggactcccctgaggctctgggagtgttgaacactctgtttgagacggtcgctccc
tcctctctccgcccggtagatatgctgctgaagggaatgttcactacacctgcttcaatg
gctaatgtcaacacagttcagctgtgggtgtcaggtgtcctggctgtcctcagagtcctc
atctctcagtccactgaagacatagtcctctctcgtgtccacgagctctccctctctcct
ctcctcctctcctgtcccaccatccgacgtctccgcgacgacagcagcctctcgtcgacc
ccgccaccgcctctggcgacctcggcaactgtcgcccccgacaaccaggaggccaacgga
gagcgtgtgccgccggaggagacgtttgccaggttcctactccagctagtaggagtgatg
ctagatgacatctcgaccagacaggtgaaggtagacatgacagaagagcaacacacgttc
tactgtcaacagctggggactctgttaatgtgtctcatacacatcttcaagagtggcatg
ttccgtaggatcacggcagcagccacccgtctcctgaagggtgaggctgttctgggtgca
ggtccaggggtcagtggtgtcttctaccccctagagggtcttaatgccatggtgggctgc
ctggtgaccacacacccctctctggttctactctggtgccaagtcctcctcatcatcaac
tacaccaactacagctggtggacagaggtacaccagacacccaggagacagagtctgtcc
tgtaccaagctgctgagccctcattcatcaggaggggtggaggaggagagaccagaggcc
aggctggccatgtgtaacagagagattgtgcgcaggggaggactcattctcttctgtgac
tacgtgtgtcagaacctgcacgactcggagcacctgacctggctgatcgtcaaccacgtc
cgtgacctcatcgacctttcccatgagcctccggtgcaggacttcatcagcgccgtgcat
cgcaactcggccgcctccggactgttcatacaggctatacagtcacgttgtgacaacctc
actactcccaccatgttgaagaagactctccagtgtctagaagggatccacctgtcccag
tctggttctctgttgatgctctacgtggacaaactactgaacactcctttcagagtcctg
gctcgtatggttgatactctggcctgcaggagggtggaaatgctgctggctgaaacacta
cagaacagtttagtccagctgcctgtggaggaactggacagaatccaggaataccttcag
atcagtggactagctcaacggcaccagaggttctactccctgctggacaggttccgagcc
tccgttgccgaggacaccagcagcccctcccctcctgtgacatcacaccccctggatggg
gaaccgccacctgcccctgaactagtcacggctgacaaggagtggtatgttgccttggtg
atgtcccagtgctgtctccgtggtgacgggtcgttcctggagacaacggaactcctgacc
aaactacctcctgacgacctctcaaccatcatgagttgcaaggacttcaacctgtctctc
ctctgtccgtgtctgagtctgggggttcagaggttaacccggggtcaggggtcgttgcta
ttggagacggccctggccgtgaccctggatcatctgagcggggtcacacagctacttcct
gttccacaccgttccttcctgccgccggccaaacctgactcggccgaaccctactgggac
aacttggctatcgtctatggtgaggctggactctacccgcgggtgatgtctctgtgtaga
gcgctgtctcagtatctgctgtgtgtgggtcagcttccttcccctctgcaaatccctgaa
gacaaacaacatctcatcaccaccttcaccaccatggctaccgagttggtggtctggcgt
gttctccaggacagtgttcctctgagtgttgacctgcagggggctctgtcctgtctgtgt
ctggccctgcaacaaccctgtgtctggaacacactgtctacagccccgtacaaaacacag
acctgttctgtcatacactgtctacgactcctcatcactgcagtggcagtaggtccaggt
gaccatctgttacatccagggaggaagagaaccaccgggtcagacggtgactcagaccag
gtccactctccaaacactgacaacgtgtgtgagcgacggtcgtgtgagatcatggctgag
ctggtggaaggtctccagagcgttctgtctctgggtcaccatagaaacagcggaatccca
gccttcctcacgccgatgctccgaaacatcatcatcagtctgtccagactaccgctggtc
aacagctacactagagtaccccccctggtgtggaagctgggctggtcccctcggccgggg
ggagagttcggcaccacccttcctgagatccctgtagagttcctgcaggagaaggacgtg
ttcagggagttcctctatcgcatcaacacactgggctggagcagtaggacccagtttgaa
gagacctgggccacactgctgggagttctggtcactcaacccatctctatggaccaggag
gaggagagagaacaggaggaggacttggagcgtacccagttgaatgtgttagcggtccag
gccatcacgtctctggttctgagttccatgactctccctactgccggaaaccctacggtc
tcctgtctggaacaacaaccgagaaacaagacccttaaagtcctggacacacggtttggc
aggaagttgtcagtgatcagaggagccgtggagagagagatccaggccatggtgtcgaag
agagacaacgtacacacacaccacccctaccacacctgggaccctgtcccctccctgtct
gctgtctcaccaggtacactgatcagccatgagaaactcctgctgcagatcaacacagag
agagagatgggaaacatggactacaaactgggacaggtgtccatccattctgtgtggctg
gggaacaacattacccctctgagagaggaagagtggggtgaggatgaggaagatgagact
gatactccggcccccgcctctcttcctacctctcctatcaactccaggaagcatcgtgca
ggtgtagacatccactcctgttctcagttcctattggagctctacagccagtggctcctc
cccggttcccctagcaacagacgcacccctgttgtgctcatcagcgaggtggtccgatcg
ttgttggcggtctctgacctgttcacggagcgtaaccagtttgacatgatgttcaccacc
ctgatggagctgcagaagagtcatcctgctgaagatgagataatgaaccagtacctggta
ccagctctctgcaaggctgccgctgtcctgggcatggacaaggcgacctctgaacctgtg
tgtcgagtgttggagctgaccctgcacagcacccacctccccagccgtatgggagcgctg
cacggcctgctgtacgtactggagtgtgacctgctagacgacaccgtaaaacagctggta
cctgccgtctctgactacatactgagtaacctacgggccatcgcacactgtgtgaacctg
cacaaccagcagcatgtcttggtgatgtgtgctgtggccttttacatgatggagaactac
cctctggatgtaggagccgagtttactgctggggttatacagatgtgtggtgtgatggta
tcagccagtgaagactccaccccctcagtgatctaccactgtgtgttgcgtgggttggag
cgcctcctgctgtcggagcagctgtctcgtatggatggagaggcactggttaaactgagt
gtcgaccgggttaacatgccaagccctcacagagccatgtctgccctgggactcatgctc
acctgcatgtacacagcggtgcgtacctcagcagagtcagcgttggggtcagaggtgatg
gggtcagaggttagaggtcaggggtcagaggttacctcgggtcctgttgctttctcctca
ggcaaggagaaggccagccctggtcgcccggccggcgctgtcgaccctcaggcccccgac
agcgagtctgtcatcgttgccatggagagggtctctgtgctcttcgacagggtccgtaag
ggtttacccagcgaggcacgggtggtggccaggattcttcctcagttcctggacgacttc
tttcctccgcaggacgtcatgaacaaggtcatcggagagttcctgtccaatcagcagcct
tacccacagttcatggctactgtggtctacaaggtgttccagaccctccatgctacaggc
cagtccagtatggtgacagactgggtgttactgtctctgtctaacttcacccagagaacc
ccagttgccatggccatgtggagtctgtcttgcttcttcatctctgcctccacctcccag
tgggtctctgccctcctgccccatgtcatcagccgtatgggtaagagtgaggtggtggac
atcagcctgttctgtctggtagccctggacttctacagacaccagctggatgaagagttg
gaccgcagagccttccagtctgtcttccagaccgtggcctcgcctggcaacacctatcag
cagctactggactgtctgcagagtatccaccaagacacatcactctga
DBGET
integrated database retrieval system
