Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374687
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Entry
139374687 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38-like isoform X1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139374687
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139374687
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139374687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
VPS18_RING_C
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
139374687
NCBI-ProteinID:
XP_070971854
LinkDB
All DBs
Position
19:complement(8529107..8576176)
Genome browser
AA seq
725 aa
AA seq
DB search
MPIAATGQLTTQEPCIFSRLPSTPEPVPKGGNLCDVAGAVAESQERTEYGGAEGGRGGLV
ASYSQTSGARGFLPLRSSNSNGSPPQSPPTSSPLASSFFHHHPYQMAMEPPRTRSRSRSG
FYQQYGATGPGINANGGNGPNHHHHHHHSQQQHHQQQHNSGCSPLGAHSHHTEQHSIRAP
GSNVSPGAQRQSGPPGAHRISPAGAVGGRSHPDHACGEESDKNEDSPSPKRQRLSGQSVL
DLSTVAPPSNPSPPMRPWELPHSRRPPPNPHPHYHQERCHTPVRHRHSPPARRQRGRLSR
TPRHLPPPPPHHPSPPPSSIRLDPQDQSYRHHYPHPHQSYSHPPPPPYGQPPAPAGGGVE
EPRAFHPPALSPRLLHPAVHHSHQAAHHHTQQQGAMVMDLHEQASVPVSYTVTPVPSHHG
LVAPLYTGQHLPPVCSSQQQIPACSVVFSTGQHYHPMLGACSVQHLPVPYSFPSLLSNDP
PFLLPPPHLSHHPPHLPPPGHFLPFPTQQSRSPLQRIENEVELLGEHLSVGGGFNYPHGG
HHPSSLPPSTPLQFLSHHDSLSQELFGVPYPHFMPRRITGRRYRSQQTVPPPPYHPGFLP
YFLSMLPVGPTVGPTISLELDVDDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYR
FNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEV
HRDSE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgcagccacgggtcaactgacgactcaggaaccctgtattttctcccgactg
ccctccaccccggagcctgtaccaaaagggggtaatttatgtgacgttgcgggggcagta
gccgagtcgcaggagcgaacagaatacgggggcgccgaggggggcaggggaggactagta
gccagctacagtcagaccagcggcgctaggggatttctgccgcttcgttcttccaactcc
aacggttctcctccgcaatcccctcccacgtcctcccccctcgcctcatctttcttccat
caccacccctatcaaatggccatggagccgcccaggactcgatcgcgttctcggtctgga
ttctaccagcagtatggtgcgaccggccccgggattaatgccaacgggggaaacggacct
aaccaccatcaccaccatcaccacagccagcagcaacatcatcaacagcagcacaactct
ggttgctcaccccttggagctcacagccaccacacggagcagcacagcatacgagccccg
ggatctaacgtctcccccggcgctcagaggcagtcgggaccgcctggagcacatcgcatc
tcacccgcaggagccgtaggtgggaggagtcatcctgaccatgcctgtggagaggagagt
gacaagaatgaggacagccccagtccaaagcgtcagagactatctggccaatcagtgctg
gatctctccacggtggccccaccctccaacccctctccaccaatgaggccgtgggagctg
ccccacagtcgcagacctcccccaaacccccacccccattaccaccaggagcgctgccat
acacctgtcagacacagacacagtcctccagcgcgtcgccagcgtggccgtctctcccgc
accccccgtcacctcccccctcctcctccccaccacccctcccctcctccctcctccatc
cgactggacccccaggaccaaagctaccgccaccactaccctcacccccaccagagctac
tctcacccccctccccccccctacggccagcccccagcccctgccggtgggggcgtggag
gagcctcgagcgttccacccccctgccctgtctccacggttactgcaccccgctgtccat
cattctcatcaagcagctcaccaccacacacagcagcaaggagccatggtcatggacctt
catgaacaggcctcagtcccagtctcctatacggtgactcctgtcccttctcatcatggt
ctggtagctcctctgtatacaggacagcacctccctcctgtctgttcctctcaacaacag
atcccagcatgcagtgtggtcttcagtacaggacaacactaccaccctatgctgggggcg
tgttcggtgcagcatttacctgtgccctactcctttccctccctcctctccaatgatcct
cctttcctcctcccccctccccacctctctcaccacccccctcacctccctccacctgga
cacttccttcccttcccgacacaacagtccagatcgccgttgcagaggatagagaacgag
gtggagctgcttggagagcacctgtctgtgggaggggggttcaactaccctcatggagga
caccacccttcctccctgcccccctccacacccctccagttcctgtctcatcacgactcc
ctgtcacaggagctgttcggagtgccgtacccccacttcatgcctcggcgaatcacagga
cgtcgttaccgctcccagcagaccgtgcccccgcccccctaccacccaggcttcctgcct
tacttcctgtcgatgcttccagtgggtcctacagtcggtcctaccatcagtctagagtta
gatgtggatgatggagaggtagagaactatgaagccctgttgaacctagcagagcgtctg
ggcgaggctaaacccagaggactgaccaaggctgatatagaacaacttccctcctaccgc
ttcaaccccaacaaccaccaatcagaacagacactgtgcgtggtgtgtatgtgtgacttt
gagtctcgtcagctgctaagagtcctgccctgtaaccatgagttccacaccaagtgtgtt
gacaagtggctgaaggctaacagaacgtgtcccatctgtcgggcggacgcctccgaggtc
catcgggattctgaatga
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