Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374711
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Entry
139374711 CDS
T10872
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139374711
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Others
Others
139374711
Endosome - Golgi transport
139374711
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
139374711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
Beta-prop_EML_2
WDR55
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
SUKH_6
WD40_WDHD1_1st
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
139374711
NCBI-ProteinID:
XP_070971920
LinkDB
All DBs
Position
19:complement(11083250..11453962)
Genome browser
AA seq
2977 aa
AA seq
DB search
MASEETPGAGRSAGQGDGAAAVSLNPGIPIRGIKMKFAVLAGLVEVGEVSNRDIVETVFN
LLVGGQFDLEMNFIIQEKDSIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTDT
ALINLVLDRVAHTDSMIADLMVDMLGVLASYSITVKELKLFFSKLQGEKGQWPPHAVKLL
SVLRSMAHRNGPDSFFSFPGKSAAAIALPPIAKWPYQSGFTFHTWLRMDPINNINVDKDK
PYLYCFRTNKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTIVHVYNRW
KNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADADRVFCGQMGAVYLFGEAL
SAAQILAIYQLGPGYKGTFKYKAESDLLFAEHHKTLLYDGKLSSCISFSYNPRATDAQLC
LESSPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDHLQHTSD
ELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRSVLDIVLAF
ARYLSNLQNGVLLLKQLCDHILFNPAIWIHAPAKVQLVLYTYLSTEFISTVTIYNAIRRV
GTVLQVMHTLKYYYWVVNPQDRSGVTPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDYG
VKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHHGSMVQAFDQRNGVRAIYKLLASN
SEGIRVQALKVLGYFLKHLPAKRKSEVMLGHGLFSLLNERLILHSNQFSMTTYNVLFEIL
TEQICTQVIHKQHPDPDSNVKIVNPQVLKVIAALLKNSPLSPESMEVRRVFLSDMIKLFN
NSKDNRRSLLQCSVWQDWMLSLCFINPKSSEEQKVTEMVYAIFRILLYHAIKYEWGGWRV
WVDTLSITHSKVTFEKHKENLARMFRQYQRLGSEGDAAGIRTISGASRDSAPSTVIELTI
DPEGVPQNQESPNTTPPSETSTASASTPSPPEREGDRTQRGQAPITVSNMLARAEEEEEI
QQVQNQISEDQRGGAGDRAEATTQETEAKLTGDKVSSKTVEAIAETATDKTDEAAAASTA
ETDEATRPETDDAKVAKSETSDDAKTSDTDKVVRPQTDGEKGSETHSCKASNVLMSEDSL
NEPKEPELAKRPEGQVSAAISACQEGSAVGASVQSVSDQVRPSSTDDSMEESSFVSAAGG
EEEEKEEEEVKTEEVVVEEEKMEEVKAEEIKTEVKTGKEKEEESVAEVTKSAVESRATPP
ASVPEESQTQPPKMEEIDLNPSVPGTDPTSTEPARQPLESTTSPPSALEAILPAAVGATV
SKSDTPQVVAPAEAPSTKGFQPEAPQATEAPSTRTDTSPKVATATAVEAGKDSAAEGPGS
ATKTKEIHIARLDVSSVASDTERLALKETSTPEVPQGDAAGASGGQANESSSSARSTMFR
IPEFRWSHMHQRLLTDLLFSIETDVQMWRSHSTKTVMDFVNSSENVVFVHNTVHLISQVV
DNLIMACGGILPLLSAATSSSHDLENIEPSQGLSVEASVTFLQRLINLVDVLIFASSLNF
TEIEAEKNMSSGGILRQSLRLVCAMAVRNCLECQQQSHFKPSQDSARGQQAVHSLMGAAK
SMPAQSPVDVVTGGMSPIRDMDRLLQEMDINRLRAVVFRDIEDSKQAQFLALAVVYFISV
LMVSKYRDILEPQNDKKLPQRSQSARSADSNAVSGGPDLESSVSLRRRDSGIGDDHSSVA
PSEADTTAQGPDAVSEALSTLSSEVRGHRDNPTADARGGKNVKDILRSLVSAPADDIMVD
PSLLPPAFLGAAMGNNPNQFRSFDRSVRVAPKKVGGAPSPGSSTPVPSATAAVVATGTPV
NNVAVVSTGDASQSTAAEAAAGSASANLPSVPTLSPMTRDTAPSMSISERLEHALDKAAP
LLREIFVDFAPFLSRTLLGSHGQELLIEGTSLMCMKSSSSVVELVMLLCSQEWQNSIQKN
AGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESHCAQYSAEKR
DEEKMCDHLIRAAKYRDHVTATQLIQKIVNILTDKHGAWGSSAFSRPREFWRLDYWEDDL
RRRRRFVRNPFGSTHSKATLKAAAEHAPEEDILKGKQSIRSHAMGNQNSESEILLDGDDD
TLSSLEEKELENLTGPVNMSTSAQLVAPAVVVKGTLSITASELYFEVDEDEASFKTIDPK
ILTYTEGLHGKWLFTEIRAVFSRRYLLQNTALEIFMANRTAVMFNFPDAGTVKKVVQCLP
RVGVGTNFGLPQTRRISQASPKQLYKASNMTQRWQRREISNFEYLIFLNTISGRTYNDLN
QYPVFPWVITNYDTEDLDLTLPSNYRDLSKPIGALNPKRAAFFNDRYESWEDDQVPKFHY
GTHYSTSSFTQMWLLRIEPFTTMFLNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELT
PEFYYLPEMFVNANNYSLGVMEDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLH
QWIDLIFGYKQQGPEATRSLNVFYYLTYEGTINLSSITDPMLREAVEAQIRSFGQTPCQL
LIEPHPPRSSAMQVSPLMFTEQMQQDVIMVLKFPSNSPVAHVAANTQPGLAAPAIITVTA
NRLFAVNKWHGLAGHQGSSVQDQQYQLPVEIDPLIASNVGTHRRQITDLLDQSIHIHSQC
FIITADNRFILLCGFWDKSFRVYSTDSAPNHRPFHKTPNPSGKLTQIVFGHRDVVTCLAR
SESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGENLGTEFVTPRAILTGHDCEVTCASVC
AELGLVISGCREGPCLIHSMNGDLLRTLEGPGGCSQPRLIQSSTEGHAVVYYDKGHFCFF
SINGKLLGHMEVEENIRAMLLSRDGQYLLTGGDGGVLSVWQVHNLKQMFTYPGCDAGIRS
MAMSNDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8934 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacgcctggtgctgggcgatcagccgggcaaggtgatggagctgcg
gcggtgtcgctcaaccctgggatcccaatccgaggaatcaaaatgaaattcgctgtcctc
gccggcctggtggaagttggggaagtttccaaccgggacattgtggagaccgtcttcaac
ctgttggtggggggccagtttgacctggagatgaacttcattatccaggagaaggacagc
attgtgtgcatggtggagctgctggacaagtgtgagcccacttgccaggcggaggtgtgg
agcatcttcacggctatcctgaagaagagcgtgaggaacctgcaggcctgcaccgacacg
gccctcatcaacctggtcctggaccgcgtggcccacactgacagcatgatcgcagacctg
atggtggacatgctaggggtgctggcaagctacagcatcacagtcaaggagctgaagttg
ttcttcagcaaactgcaaggagagaaaggccaatggcctccccatgcggtgaagctgctg
tctgtcctgaggagcatggcccaccggaacggacctgactccttcttcagcttcccaggg
aagagtgctgctgctatagctctgccccctatagccaaatggccgtaccagagtggattc
accttccacacgtggctccgcatggatccaatcaacaacatcaatgttgacaaggacaag
ccttacctgtactgttttcgcaccaacaaaggtctgggatactctgcacactttgtgggc
ggctgtttgattgtgacctcgttaaagtccaaggggaagggattccagcactgtgtgaaa
tatgacttcaaaccacagaagtggtacatggtgaccatcgttcacgtctacaaccgctgg
aagaacagtgagatcagctgctacgtcaatggagagctcgcctcctacggagaaatcacc
tggttcgtcaacaccagcgacactttcgacaagtgtttcctgggttcgtcagagacggcg
gacgccgaccgtgtgttctgtggtcagatgggggcggtgtatctgtttggcgaggccctc
agtgcagcccagatcctggccatctaccagctggggcctggttacaagggcacgttcaag
tacaaggctgagagtgacctcctgtttgctgagcaccacaagaccctactgtacgacggc
aagctgtcctcctgcatttccttctcctacaacccccgcgccactgacgctcagctgtgc
ctggagtcctcccccaaggacaacgcctccatcttcgtccactcgccacacgcactcatg
ctgcaggatgtgaaggctgtggtgacccactcggtccagagtgccatccactccatcggg
ggagtgcaggtcctcttccccctgtttgcacagctggatcacctccagcacaccagcgat
gaactggacacctctgtctgttgcactttgctgtcctttgtgatggagctgctgaagaac
tctgtggctatgcaagagcaggtcctggcctgcaagggcttcctggtcatcggttacacc
ctggagaagtcttccaaggtgcatgtgactcggtccgtcctggacatcgtgctggccttc
gcccgttacctcagcaacctgcagaacggcgtcctgctgctcaagcagctgtgtgaccac
atcctgttcaaccctgccatctggatccatgcccctgccaaggtgcagttggtgttgtac
acctacctgtccaccgagttcatcagcacggtgaccatctacaacgccatccgcagggtg
ggcacggtactgcaggtcatgcacacgctcaagtactactactgggtcgtcaacccccag
gaccgcagcggagtcacgcccaagggcctcgacggtccgagacccaatcagaaggagatc
cactctctcagagcctttctgctgctgtttgtgaaacaactcataatgaaggattacgga
gtgaaggaagatgagcttcagagtattctcaactacctgctcaccatgcatgaggacgac
aatctaatggatgtgcttcagctgctggtggctctgatgtcggagcatcacggctccatg
gtgcaggcctttgatcagcgcaacggagtacgggccatttacaagctgctggcgtccaac
agtgaaggaatcagagttcaggcactcaaagtcttgggctacttcctcaaacacttgccc
gctaagaggaagtcagaggtcatgctgggtcacgggctcttctccctgctcaacgagcga
ttgattctgcactccaaccagttcagcatgacaacctacaacgtgctcttcgagatcctg
accgagcagatctgcactcaagtgatccataaacagcatccggaccccgactccaatgtg
aagattgtcaacccgcaggtcctgaaggtgatcgctgccctgctgaagaactctcccctc
tccccagagagcatggaggtgcgcagggtcttcctgtcagacatgatcaaactgttcaat
aacagcaaagataaccggagaagcctgctgcagtgctcggtgtggcaggattggatgctc
tctctgtgcttcatcaaccccaagagcagcgaggagcagaaggtcactgagatggtgtac
gccatcttccgcatcctgctctaccacgccatcaagtacgagtggggcggctggcgcgtg
tgggtggacaccctgtccatcacccactccaaggtgacctttgagaagcacaaggagaac
ctggcccgtatgttccgtcagtaccagagactgggctccgagggcgatgcggctggtatc
cggaccatttccggggccagccgagactctgccccctccaccgtgatcgagctcaccatt
gacccagagggggtcccccagaaccaggagtcccccaacactacccctccctcagaaacc
tcaacagcatctgcctccacccccagccctcctgagagagaaggagatagaactcagagg
ggtcaagcacccataactgtgtccaacatgctggccagagctgaagaagaggaggaaata
cagcaggtccagaatcagatctctgaggatcagagaggtggtgctggtgacagagctgaa
gctactacacaggagactgaagctaaactcactggggataaagtcagcagtaagaccgtt
gaggccattgctgagacagccacagacaagactgatgaagctgcagcagctagcacagct
gaaacagacgaagcgaccaggccagaaactgatgacgcgaaggtggctaaatcagaaacg
agcgacgatgctaaaacatctgataccgacaaagtagtaagacctcaaacggatggagag
aaggggtcagaaacgcacagctgcaaagcctccaacgttcttatgtctgaagattccctg
aacgaacccaaggaaccagaactggcaaagcgaccggagggacaggtctctgctgccatc
tcggcctgccaggaggggtcagcggtcggggcatctgtccagtcagtcagtgaccaggtc
cgacccagctccaccgacgacagcatggaggaatcctcttttgtctccgccgctggtgga
gaggaggaagaaaaggaggaagaggaggtgaagacagaggaggttgtagttgaggaggag
aagatggaagaggttaaagcagaggaaatcaagacggaggttaaaactggaaaggagaag
gaagaggagagtgttgccgaggtcacaaagtcagcagtggaaagtcgagccacaccacct
gcttctgtacctgaggagagtcagacacaaccccctaaaatggaggagattgaccttaac
ccgtctgtaccaggcaccgaccccaccagcacagagccagcacggcagcctttagaatcc
acaacatcacccccttcagccctggaggccatactaccagcagcagtaggggccactgtc
tctaaatctgacaccccgcaggttgtggcaccagcagaggcccccagcaccaaggggttc
cagccagaagccccacaggccacagaggcccccagcaccaggactgatacctctccgaag
gtagccactgctactgctgtggaggcagggaaagacagtgcagcagagggccctggctct
gccaccaagaccaaagagatccacattgccaggctggatgtgtccagtgtggcctcagac
acagagagactggctctaaaggagacctccacacctgaagttcctcagggcgacgcagcc
ggtgcctcaggaggccaggccaacgagagcagctcctccgctcgctccaccatgttccgt
attccagagttccgttggtctcacatgcaccagcgcctgctcacagacctgctcttctcc
atcgagactgacgtgcagatgtggaggagtcactccactaagacggtgatggactttgtg
aacagcagtgagaatgtggtgtttgtccacaacacagtgcacctcatctctcaggtggtg
gacaacctcatcatggcctgtggaggcatcctgcccctgctttctgctgccacatcctcc
tcacatgatctggagaacattgagccgtcccagggtctgtcggtggaggcgtcggtcacc
ttcctgcagcgcctcatcaacctggtggatgttctgatcttcgcctcctccctcaacttc
accgagatcgaggctgagaagaacatgtcctctggcggtatcctcagacagagcctccgt
ctggtgtgtgccatggctgtgaggaactgtctggaatgtcagcagcagtctcacttcaag
cccagccaggacagcgcccgcggccagcaagccgtgcacagcctcatgggagccgccaag
tccatgcccgcgcagagccctgttgatgttgtgacaggagggatgtctcccatcagagac
atggaccgtctgctacaggaaatggacatcaaccgcctcagagccgtggtcttcagagat
atcgaggacagtaagcaggctcagttcttggccctggccgtggtttacttcatctctgtt
ctcatggtgtccaagtaccgagacatcctggagccccaaaacgacaagaaactcccccag
cgcagccagtctgccaggagcgcagacagtaatgccgtctctggcggtcccgacctggag
agcagtgtgtccctccgtcgccgagactctggcatcggggatgaccatagctccgtggcc
cccagtgaggcggacaccaccgcccaggggcccgacgccgtgtccgaggccctgtccacc
ctctcctcagaggtcaggggtcacagagacaaccccacggcagacgccaggggcgggaag
aacgtgaaggacatcctgcgcagcctggtctcggcgcctgctgatgacatcatggtggac
cccagccttctgccgccggccttcctgggagctgctatgggaaacaatcccaaccagttc
agatcctttgacagaagcgttcgggtggcgcccaagaaggtgggcggggctccgtcccca
ggctcctccactcctgtcccatcagccaccgctgccgtggtggctaccgggacaccagtc
aacaacgttgccgtggtttccacgggcgatgcctcccagagcaccgccgctgaggctgca
gccggatcagccagcgccaacctgccatctgtccccacgctgtccccaatgacccgggac
acagcccccagtatgagtatctcagagaggctggagcatgctctggataaggctgccccc
ctactgagagagatctttgtggactttgcccccttcctctctcgcaccctgctgggtagt
cacggacaggagctcctcatcgagggcaccagtctgatgtgtatgaagtccagcagttcg
gtggtagagctggtcatgctgctctgttctcaggagtggcagaactctatccagaagaac
gcaggcttggccttcatcgagctggtcaacgagggcaggctactgagccacaccatgaag
gaccacctggtgcgggtggccaatgaggctgagttcatcctgagccgacagagagccgag
gacatccacaaacacgctgagtttgagtcccactgtgcccagtactcggctgagaagcgt
gatgaggagaagatgtgcgaccacctgatccgagcggccaagtaccgcgaccacgtgaca
gccacccagctcatccagaagatcgtcaacatcctgacggacaaacacggtgcctgggga
agctctgccttcagccgtcctcgggagttctggcgcctcgactactgggaggacgacttg
aggcggcgccggcgcttcgtcaggaaccccttcggatccactcactcaaaggccacgctc
aaagctgcagccgaacacgctccggaggaagatatcctcaaaggcaaacagtccatcaga
agtcacgcgatgggaaatcagaactctgagagtgagatattgttggatggcgacgatgac
actctatcatccttggaggagaaggaattggagaacctaacaggccctgtaaacatgagc
actagcgctcagctggtcgccccggcggttgtggtgaaaggaacgctgtccatcactgcg
tctgaactctacttcgaggtggatgaagatgaggccagctttaagacgatcgatccaaag
atcctaacctacacagagggccttcatggtaaatggctgttcacagagatcagggctgtc
ttctctagacgttacttgctacagaacactgctctggagattttcatggccaacagaact
gcggtcatgttcaacttcccagatgcaggcacggtcaagaaggtggtccaatgcctccct
cgcgtgggggtgggcaccaactttggtctcccacagaccaggcgtatctcccaggccagt
cccaagcagctctacaaggcctccaacatgacccagcgctggcagcgcagagagatctcc
aactttgagtacctgatcttcctcaacaccatctctggccgtacgtacaacgacctgaat
cagtaccccgtcttcccctgggtcatcactaactacgacactgaagacctggacctcact
ctgcccagcaactacagagacctgtccaagcccattggtgccctgaaccccaagagggcg
gcgttcttcaacgaccgctatgaatcctgggaggacgaccaggtgcccaagttccactac
ggaacccactactccacctcctccttcacccagatgtggctgctgcgcatcgaacccttc
accaccatgttcctcaacttccagggagggaagtttgaccacgctgaccgcaccttctcc
tccgtgtcccgggcctggaggaactgccagagagacacgtccgacgtcaaggagttgacc
ccagagttctactacctccctgagatgtttgtaaacgccaacaactacagcctgggggtg
atggaggatgggactgtggtgtctgacgtggagctaccaccctgggctaagacccccgag
gagtttgtacgtatcaacagactggctctggagagtgagtttgtgtcgtgccagctgcac
cagtggatcgacctgatctttggctacaagcagcagggtcctgaggccaccaggtctctc
aacgtcttctactacctgacctatgaagggaccatcaacctcagctccatcaccgacccc
atgctcagagaggctgtggaggcacagatcaggagttttggacagaccccatgtcagctg
ctcatcgagccacacccaccaaggagctccgccatgcaggtgagcccgttgatgttcacg
gagcagatgcagcaggatgtcatcatggtgttgaagttccccagcaactctcccgtggcc
cacgtggccgccaacacccagccgggcctcgccgcgcccgccatcatcaccgtcaccgcc
aaccgcctcttcgccgtcaacaagtggcacggcctggccggtcatcaaggctcctcggtg
caggaccagcagtaccaactgcccgtggaaatagaccccctgatagccagtaacgtgggg
acccaccgtcgtcagatcacagacctgttggaccagagcattcacatccactctcaatgt
ttcatcatcactgcagacaaccgcttcatcctgctctgtggcttctgggacaagagcttc
cgcgtctattccactgactcagcccctaatcatcggcccttccacaagacacctaatcca
tcagggaagctgacccagatagtgtttggtcaccgtgacgtggtgacgtgtctggccagg
tctgagtcgtacatcggaggggactgctacgtcctatcaggctccagagacgccacgtta
ctgctctggtactggaacggaaaacacagcagcatcggagagaacctcggaactgagttt
gtgacgcccagagccatcctgacgggtcatgactgtgaggtgacctgcgccagtgtgtgt
gccgagctgggactggtcatcagtggctgcagagagggcccgtgtctgatccattccatg
aatggggacctgctgcggaccctggagggcccggggggttgctcgcagccccgtctcatc
cagtcctctacagagggccacgccgtagtctactacgacaagggacacttctgcttcttc
tccatcaacggaaagctgctgggacacatggaggtggaggagaacatcagggccatgctg
ctgagtcgggacggacagtacctgttgacagggggagacgggggagttctgtctgtctgg
caggttcataacctcaaacagatgttcacctaccctggctgtgacgcaggcatccgctcc
atggccatgtccaacgaccaaaggtgcatcataaccggcatggcgtctggtagtatagtc
ctgttctacaacgacttcaacaggtggcaccacgagtaccagaccagatactga
DBGET
integrated database retrieval system
