Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374904
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Entry
139374904 CDS
T10872
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139374904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139374904
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139374904
mRNA degradation factors
5'-3' decay
Decapping complex
139374904
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
HTH_AraC
Motif
Other DBs
NCBI-GeneID:
139374904
NCBI-ProteinID:
XP_070972224
LinkDB
All DBs
Position
19:19153890..19181685
Genome browser
AA seq
812 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEDEIDQFNDDTFGDGAIDDDWQEEHKRLAELEEQKNDG
LGGLGLGTLGMGGMGGGNASTVHLPPPASRVPHPSSLPPPHHSLSSMPPPGLEERGGGDL
AESLAMLILGADPAIASVGGPAGPDDRSTGLPSIPQQHHHPSQLPPHHQLTPSGLPPGPP
HLSLLSYQQHQHLLRRGAAPMQQMNSHNIWENNLGFGPVSITPGLITQMEDSPLMSIIKE
VGLPNRPPSMMSEDGRDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHHHHQ
QIHHPTAVHVRAPVHHQHRYPPSFPERISPNTLLNIANSPLCRPPFPAGVGPVLSQIQRA
QMLNSQVAGFPRGCQGPPLLPGGGGFRPFFGQPPPHRMGPHPGGPPPNHNHVPCPIIRHN
TTHLHPQHRRMLTQRMQSRGGERGGRVGDWRSRDPYSNLMSQREKEWVAKIQMMQLQSTD
PYLDDYYYQNYFEKLEKRQERDRDGVRKEHTTKLITPQVAKLEHTYRPVQFAGSLGKLTV
SSVNNPRKMIDTVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFMQTP
EEQREALLEQHKTHTLQLYSSLKEKEWDDRVSDEQCLLIMSVRKGKRLVSRLIPFLPPLQ
AATVVMGIARNLPALAKKDKQDQVLCWLVEPIAVVISSLSSASLTDLLQELQGSEGQLSR
VLQNKFGVTLLYLILSEGERMQSSNPTCQLMDDNRWTELVFSVTRELLNVPSSSLSPPLF
TPPNLLSLFSRYVDRQRLELLQEKLQISALSR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaagatgagattgaccagtttaatgacgacaccttcggagatggggccatcgac
gatgactggcaggaggagcacaagcggctagccgagctcgaagaacaaaagaacgatgga
ctcggaggtttaggtctagggacactagggatggggggaatgggaggaggaaacgcctcc
actgttcaccttcctcctcccgccagtcgcgtcccccatccgtcttccctcccaccacca
catcactccctctcttcgatgccccctccgggcctggaggagagggggggaggcgaccta
gccgagtccctagccatgttgattctcggggcggacccggccatcgccagtgtgggtggt
ccagccgggcctgatgaccgatccactggtctcccttccattccccagcagcatcaccac
ccctcccagctccctccccaccaccagctgaccccgtctgggctaccccccggcccaccg
cacctctccctgcttagctaccagcagcatcagcaccttctacgacgaggggcggccccc
atgcaacagatgaactctcacaatatctgggagaacaacttgggattcgggcctgtgagc
atcacccctggactaatcactcaaatggaggacagtccacttatgtctatcatcaaagaa
gtggggctgcccaatcggcctccgtcaatgatgagcgaggatgggcgggacttgtcggaa
agggcccccccgcctcgctcgtcctctcccgtgattggtagcccaccagtgagggctgtg
cctatcgggactccgcccaagcaaccgatgagtcatgctatgaatcatcatcatcatcag
cagatccaccaccccactgccgttcatgtgcgagccccggtccaccaccaacaccgctac
cccccttccttccctgagcgcatctctcccaacaccctcttaaacatcgctaactctcct
ctgtgtcgtcctccgttcccggccggcgtgggccccgttctgtcccagatccaacgcgcc
cagatgctcaactctcaggttgctggcttccccaggggctgtcagggtcccccgttgctg
cctggtggcggaggcttcaggcccttcttcggccagccccctccccacaggatgggtccc
caccccggcgggccccctcccaaccacaaccacgtcccttgtcccatcatccggcacaac
accacgcacctgcacccccagcaccgccgcatgctcacccagaggatgcagagtagagga
ggtgagcgtggtgggcgtgttggggactggcggagcagggacccctacagtaacttgatg
agccagagggagaaggagtgggtggccaagatccagatgatgcagctgcagagcactgat
ccatacctggatgactactactaccagaattactttgagaagttggagaagaggcaggag
cgagacagagacggcgtgaggaaggagcacaccaccaaactcatcaccccccaggtggcc
aagctggaacacacctacagaccagtgcagtttgcaggctcgctgggtaagctaactgtg
tccagcgtcaacaaccccaggaagatgatcgacacggtggtgactagtcgcactgatgac
gaggagaagagagagaaacaggtgtggaataagagacggcagatcctctacactgtggag
aagatgtacagtctgctgctggaggtgcaggactttgagaagcgcttcatgcagacgccg
gaggagcagagggaggccctgctggagcagcacaaaacccacacgctgcagctctacagc
tccctcaaggagaaggagtgggacgacagggtgagtgacgagcagtgtctgttgatcatg
tcggtgcgtaagggaaagcgcctcgtctccaggcttatccctttcctgcctccgctgcag
gccgccaccgttgtcatggggattgcccggaacctgccagccctggccaagaaagacaaa
caggaccaggtgctgtgctggttggtggagccaattgccgtggtgatctcatccctatct
agcgcctccctcacagatttgctgcaggagctgcaaggcagcgagggtcaactgtccaga
gtgttacaaaataagtttggtgtgacactgctttacctgatcctgagtgaaggagagcga
atgcagagctccaaccccacctgtcaactcatggatgacaatcgatggacagagttggtg
ttctctgtgaccagggagctgctcaacgtgccctcctcgtccctgtcccctcctctcttc
acccctcccaacctgctctctctcttctcgcgctacgtcgaccgacagaggctggagctg
ctgcaggagaagttacagatctccgcattgtccaggtag
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