Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374940
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Entry
139374940 CDS
T10872
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139374940
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
139374940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Mcl1_mid
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
Ctf4_C
WD40
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
HMG_WDHD1
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_SCAP
WD40_Gbeta
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
WDR90_beta-prop_4th
HMG_box
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR41
Beta-prop_WDR75_1st
Tricorn_2nd
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
139374940
NCBI-ProteinID:
XP_070972299
LinkDB
All DBs
Position
19:23224619..23268176
Genome browser
AA seq
1130 aa
AA seq
DB search
MPCERKPMRYGHSEGHTDVCFDDTGKYIVTCGSDGDVRIWESLDDDDPKSINVGEKAYSL
ALKNGKLVTAASNNTVQIHTFPEGDPDGILTRFTTNATHITYNSSGSRVAAGSSDFMVKV
VEMYDSSQQKTLRGHTAPILSVTFDPKDEFLASASCDGSVAVWKIEEQTQVTSWPLLQKS
NDVINAKSLCRLAWQPKAAKLLAVPVETTVQLYQRDSWAQVGTLSDDLGTQAINVVAWSP
CGKFLAAGSIGGLLTVWDVESKLCVERQTHEKGYTVCGLAWHPSGGQIAYTDTEGCLGVL
DGLSSSSSSSSTTTSSTMTKQAPASYDDLFDDDDDRPMDEGISEGARSPAKNPGDEDDDD
DLIPATGRARNRSAFLDDENSLDTGSLKQGLDKFVDDVGSAIVPPAAVAAPLRPVYDGPM
PTPPQKAFQPGSTPAHLMHRFMMWNSVGIVRGYNDDQDNAIDVEFHDTAVHHAMHLTNSL
GHTVADLSQEAVLLACPGTDELASKLQCLHFSSWDTNKEWMVDLPKGEDVQALCLGQGWA
AAATSALMLRLFSIGGMQRELFSLPGPVVCIAGHGEQLLVVYHRGTGFDGEQALGVQLLQ
FGQKRRQVIHGEPLPLSRKSHLSWLGFTAEGTPCFIDSEGVVRLLNRSLGNMWTPVCNTR
DNCKGKSDHYWVVGVHENPQQLRCIPCKGSRYPPTLPRPAVAVLPFKLPLCQTTTEKGQM
EEQYWRSVLLHNHYGFLSSSGYEIDEEGQSQAQKEQQELLMKMFALSCKLEREFRSVELA
ELMTQNVVTLAIRYASRSRRMALAQRLSDLALEKANQLQGEEPQEEEEEPLQYTRRNTGY
SQSSSEMGADRQHSSHRQAQEEEVDEEQGQEEHMDEGDVAESKRQGLNPFAKGTAASPEK
LSPKPVSKEGRVNPFKVSSGLGRLGSAGGQNRVTNVLDSMMSSSKKPTALLSSSGSTGKL
NKTPFLKPLAPRPKTKTQSTLLHMNAPKAANKKAAEEREPAVCRLKQTEAPPPASPAENV
ENKKHKSGFQLWLEDNRRIILADNPDLEETDVIKEAIGLFRTLSADDRLTWTERAKGQSG
DVADMKKRKRGEEESRGDKNGQSEADETSAKKKKPLDTSTKLSAFAFNKN
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgccctgtgaaagaaagccaatgcgctacggccactcggagggacacactgatgtttgc
ttcgatgacactggaaagtatatagtcacttgtggaagtgatggggatgtgagaatatgg
gagagtctggatgacgacgatcccaagtccatcaacgtgggggagaaggcctattcttta
gccttgaagaatgggaagctggtcacagcagcctccaacaacacagtacaaatccacacg
ttccctgagggtgacccagatggcatcctcacccgctttaccaccaacgccacccacatc
acctacaacagcagcggctccagagtcgctgccggatccagtgacttcatggtgaaggta
gtggagatgtacgacagcagtcagcagaagaccctgcggggacacactgcacccatcctc
agtgtcacctttgaccccaaagatgagttcctggcctctgctagttgtgatggatctgta
gctgtgtggaagattgaggaacagactcaggtgaccagctggccgctgctgcagaagtcc
aatgatgtcatcaatgccaagtccctgtgccgactggcctggcagcccaaggccgctaag
ctcctggccgttcccgtggagacaacggtgcagctgtaccagagagactcctgggcccag
gtgggcacactctccgatgaccttggcacacaggcaataaatgttgtggcatggtcgccc
tgtgggaagttcttggctgcagggagcatcggaggtttgctgacggtctgggacgtggag
agcaagctgtgtgtggaaaggcagacgcatgagaagggctacaccgtgtgtggactagct
tggcatccctcgggcggtcaaatagcctacaccgacacagagggctgtcttggcgtgctg
gatgggctctcctcttcatcctcttcttcctccactacgacttcctccactatgaccaag
caggctccagccagctacgatgaccttttcgacgacgatgacgacagacccatggacgag
ggtatcagcgagggcgcacgttcacccgccaagaaccccggggacgaggacgatgacgac
gacctcatacctgcgacggggcgagcacggaacaggagtgccttcctcgacgacgagaac
tcactagacacaggctcgctcaaacaggggctggataagtttgttgatgacgtgggcagc
gccatagtgccccccgctgccgtggctgctcccctccggcccgtctatgacgggccaatg
cccaccccaccacagaaggctttccagccaggctccaccccggcacacctaatgcaccgc
ttcatgatgtggaactcggtgggaattgtgcgcggctacaatgacgaccaggacaacgcc
attgatgtggagttccacgacacagccgtgcaccatgcaatgcacctcaccaactccctg
ggccacaccgtggcagacctctcccaggaggccgtgctgcttgcctgccccggcaccgac
gagctcgccagtaagctccagtgccttcacttctcatcgtgggacaccaacaaggagtgg
atggtggatctgcccaagggggaggatgtgcaggccctatgcctgggccagggctgggcg
gcggctgccaccagtgccctcatgctgcgcctcttctccatcggagggatgcagagggag
ctgttcagcctgcccggacccgtggtctgcattgctgggcatggggagcaactgctcgtc
gtctaccaccgaggcacagggtttgacggagaacaggccctaggggtccagctgctgcag
tttggacagaagaggcggcaggtcatccacggggagcccctccccctctcccgcaaatct
cacctttcatggttaggcttcacagccgagggaaccccatgcttcattgactctgagggt
gtggtgcgcctgctaaaccgctccttgggaaacatgtggacacctgtgtgtaacaccagg
gataactgcaagggcaagtcagaccactactgggtggtgggagtgcatgagaacccccag
cagctcaggtgtatcccatgtaaagggtcccggtacccccccacgttgcccaggcctgct
gtggccgtccttccattcaagctgcccctctgtcagaccaccacagagaagggccagatg
gaggagcagtactggcgctcggtgctcctccacaaccactacggcttcctgtcgtccagt
ggctatgagattgacgaggaaggccagagccaagcccagaaagaacagcaggagctgctc
atgaagatgtttgccctgtcgtgtaagctggagagggagttccgctccgtggagctggcc
gagctgatgacccagaacgtagtgaccctggccatccgctacgcctcgcggtcccgccgc
atggccctggcccagcgcctcagcgatctggccctggagaaggccaatcagctgcagggg
gaggagccccaggaggaagaggaggagccactccagtacaccagacggaacactgggtac
agccagagcagcagtgagatgggtgcagatcgccaacacagcagccacagacaagcacag
gaggaagaggtggatgaagagcagggtcaggaagaacatatggacgaaggggatgtagca
gagagcaaaagacaaggtctaaatcccttcgctaaagggactgctgcatcacctgagaaa
ctttctcccaaacctgtaagcaaagaaggacgtgtgaaccctttcaaggtgagcagcggg
ttagggaggttgggttcggcggggggtcagaacagggtgacaaacgtcctggacagcatg
atgtcgtccagcaagaagcccactgctctgctgagcagctccggctccacggggaaactg
aacaaaacacctttccttaagcctctggctcccagacccaagaccaagacccagtctaca
ctgctgcacatgaacgctcccaaagcagccaataagaaagcagcggaggagcgggagccg
gcagtgtgtaggctgaaacagaccgaggcaccgcctccagcctcaccagcagaaaatgtt
gagaataagaagcacaagtcgggcttccagctgtggctggaggataataggaggatcatc
ctggctgacaaccccgatctggaggagacggatgtcatcaaggaggccattggcctcttc
aggaccctgtctgcagacgaccggctgacctggacagagcgggcaaaaggacagtctgga
gacgtggcggatatgaaaaaacgaaagcgaggagaagaagagagcaggggagacaagaac
ggacagagtgaggcagacgagaccagtgccaaaaagaaaaagcccttagacacctcaacc
aagctctcagcatttgccttcaacaaaaattaa
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