Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374946
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Entry
139374946 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04137
Mitophagy - animal
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139374946
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
139374946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139374946
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
139374946
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139374946
Multi subunit type E3
ERAD complex
139374946
LMBR1L-GP78-UBAC2 complex
139374946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
G2BR
zf-C3HC4_2
zf-C3HC4
CUE
zf-C3HC4_3
zf-RING_UBOX
zf-RING_11
zf-rbx1
zf-ANAPC11
zf-RING_5
zf-RING_16
Prok-RING_4
zf-RING_Vps41
zf_RING_Vps8
RING_XB3-XBAT31
zf-C3HC4_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
139374946
NCBI-ProteinID:
XP_070972320
LinkDB
All DBs
Position
2:complement(81979369..81994783)
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AA seq
630 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSAVFLAGSILSGYCTVPEPVEYTQTQSSSPVESDDVDEDP
ITSLSDVAATVRLYLVSDTVFVWVMVNTACCVLMLIAKVIQCIVFGPLRVSEKQHLKDKF
WNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAVLVFMHLMVQLCKDRFEYLSFSPTTPMVS
HVRVLTLLVGMLLTCCGLALLCGLLGNPHGVHTVTFMAAECMLVSVRTGHVIIRYFIHLW
DLNHEGTWESKGSYVYYTDFVMELALLGLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLF
HEVQKRIRRHKNYLRVINNMEARFAVATSDELVANNDDCAICWDSMLTARKLPCGHLFHN
SCLRSWLEQDTSCPTCRMSLNISEGAGGEREERQREPMLEDNMGPGGPGPDARQHLNQHN
HFFHFDGSRIASWLPSFSVEVMHTTNILGIVQQANNSQLNAMAHQIGEMFPGVPYHLVLQ
DLQLTRSVEVTTDNILDGRIVVPFPIQPVDHSASQVNPSPQDVGGASGSSEFVTPEVEDF
EVRGSRFSKSAEERQKILLQRKDELLLRAQRRYLSKSPEENAAAMNDDDEYDEGLPSLED
DIPAGSVLDSMTLRRRKLAAAAERRMHTYQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgctgtttttggagagatttccatggcccagtttgcagacatatacagctctg
agtgctgtatttctcgctgggtcaatattgagtggctactgtactgtcccagagccagta
gagtacacacagacacagagcagttctcctgtagaaagtgatgatgttgatgaggaccca
atcaccagccttagcgatgtggcagccactgtccggttgtacctggtctcagacactgtt
ttcgtttgggtgatggtgaatacagcctgctgtgtcctgatgctgattgcaaaggtgatc
cagtgcattgtctttgggccgctccgtgtcagtgaaaaacagcacctaaaggacaagttc
tggaacttcatcttctacaagtttatcttcatcttcggggtgctcaacgttcagacggtg
gaggaggtggtgatgtggtgtctgtggtttgctgtcctcgtcttcatgcacctcatggtc
cagctctgcaaggaccgctttgaatatctgtcattctcacccaccactcctatggtcagc
catgtgagggttctgaccctgctggtgggtatgctgctgacctgctgtggcttggctctg
ctctgtgggctcctgggaaatccccacggcgtacacaccgtcaccttcatggccgctgag
tgtatgctggtgtccgttagaactggacatgtcattatccggtactttatccacctgtgg
gacttgaaccatgagggcacctgggaaagtaaaggatcctacgtttactacactgacttt
gtgatggagctggctctgctggggctggaccttatgcaccacatccacatgctgctgttt
ggtaacatctggctctctatggccagcctggtgatcttcatgcagctgcgttacctgttc
catgaggtgcagaagagaatccgtcgccacaagaactacctccgtgtcatcaacaacatg
gaggccaggtttgctgtggccacctctgatgagctggtagcgaacaatgatgactgtgct
atctgctgggactccatgttgacagcacgcaagctaccctgtggacatctcttccacaac
tcttgcctgcgttcctggttggagcaggacacgtcgtgtcccacgtgccgtatgtctctg
aacatcagcgagggggctggaggagagagagaggagaggcagagggagcccatgctggaa
gacaacatgggccctggaggccccgggccagatgcaaggcaacacctcaaccaacacaac
cacttcttccactttgatgggtctcgcattgccagctggctgcccagtttctctgtggaa
gtgatgcacacaaccaacatcctgggaattgtacaacaggccaacaactcccagctcaat
gccatggcccatcaaatcggggagatgtttccgggggttccctaccatcttgtgctgcag
gatctgcagctgacccgctctgtagaggttaccactgacaacatcctggatggacgcatc
gtggttcctttccccatacagcctgtggatcactccgcctcccaggtcaacccctcccca
caagatgtgggtggggccagcgggagttcagagttcgtgacccccgaggtggaggacttt
gaggtcagaggcagccgcttctccaagtcagccgaggagagacagaagatactgctacag
aggaaagatgagctactgctacgagcacagaggagatatctgagcaagagcccagaggaa
aatgctgctgctatgaacgacgatgatgagtacgatgaaggtctgccctctcttgaggat
gacatcccagcaggatcagttttagactctatgaccctgcgacgcagaaagttagcggca
gctgctgagcgccgcatgcacacttaccagtga
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