Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375001
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Entry
139375001 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139375001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139375001
03036 Chromosome and associated proteins [BR:
ocla03036
]
139375001
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139375001
Coactivators
SAGA/TFTC/STAGA complex
139375001
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
139375001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
139375001
NCBI-ProteinID:
XP_070972436
LinkDB
All DBs
Position
2:82499137..82517476
Genome browser
AA seq
999 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGSTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQAMPNKIISASTSSITTGGVLNAGTNLQTYGTA
SQTISTAPPGSVTLPAQSTSFNRGTILGPAGTSAVTVPNPNITTTTTTTTIRTASPGLQS
FNGNTGALKLVNSPAASQVGSGSSTVVSTVSAGNSNIIVSMASQPPSLPNFTGPQQSAVA
TTPTIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGATTSQVMNHSNTLMHTKMVAP
NQPVSAGQSIILGGSPPPVVVNSPISQPQSVASPTLTAGVKPTVNGVGQPTVTIVRPPSA
PVMATPVQQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVM
VTQQVLAQAQAKTQQGQAAVSNISPQPGIPTAGANVRVSTPSQAPGTPQAVRLASPFQAR
MAQSPSPSSPAIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTA
AASASGSPISTVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIE
PEEFTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIR
PRLPTTISPATGIVRTPTTALGVRRPGVQGVQTRMPMVITQTIRPQGVVTRGPSIIPGRS
PVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIR
SCKDEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRT
DGGKDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLK
AKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAAS
SRQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatatcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggcgatgcccaataagattatcagcgcttccacctct
tccatcactactgggggtgttttaaacgctggtactaatctacaaacatatggaaccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctcagtcgactagc
ttcaacagagggactattttgggtcctgctggcacatcagcggtgactgttcccaatcca
aacatcacaacaacaacaacaacaacaactatcaggactgcttcacctggtttacagagt
tttaacgggaacactggagctctgaagttggtcaactcgcctgcagcttcccaagtcggg
tcaggcagcagcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtcc
atggcttcacaacctccttctctgccaaactttactggacctcaacagtctgcagtggct
actactcccactattgcattgcaaagacagcccagccccatggccattgcctcacagaat
ggagtaatagaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggcc
accacctctcaggtcatgaaccacagcaacactctcatgcacactaaaatggtggcaccc
aaccagccagtctctgctggccaatcaataattctcggagggtctccccctcctgttgtt
gttaactcaccaataagccagccacagagtgtggcgagtcccactctcacagctggggtg
aaaccaactgttaatggagttggtcagcccacagtgaccatcgtgaggccccccagtgct
cctgtgatggctacccccgtacagcagcagagacctgggctgttagcaagtaccacaagg
actgctgcaccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccct
ggatttaccataccacccggtatggtgctggtgcgtacggacacgggacagctagtgatg
gtgactcagcaggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtc
tccaacatctccccccagcctggaatccccaccgctggggccaacgtcagagttagcact
cccagccaggcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaaga
atggcccagtccccctctccctctagccctgctatacagaaggccataaccgtggcacct
gcgggtgcgtctgtgtcagtgaaaatgaccacccctcagaaggcccagtctgtgatcaca
gggggccaggccttggtcaagcctggtgctgtacggcccactatcaccctgaacactgca
gcagccagtgcctctggaagccctatttcaacagtctcccaggaaatgcaagagaatgtg
aagaagtgcaagaacttcctgtccaccctgatcaaactggcgtcccacaactccccctcc
cctgacacatctaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgag
cctgaggaattcaccacgagtctgcaggctgagctgaaatcctctccacagccgtacctc
atccccttcctcaagaaaagcctccctgccctgcggctgtcccttctcaacaaccagcag
tctcttctggcctccacctccgcttctgccctggccgtcccctccacctccaccatcagg
ccccggctccccaccaccatcagccccgccacaggcatcgtcaggacacctaccactgcc
ctgggtgtgagaagaccaggggtccagggggtccagacccgcatgcccatggtcatcact
cagactatacgaccgcaaggcgtagttacaagaggaccctctattatcccgggcagaagt
cctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggc
gggacgttcagagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctg
aacgaggaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgc
tcctgtaaggacgaggccttcctccccccaggcctgctgcacagacgcatcatggaggct
gccaagagatttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgct
acccaggccaggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcacc
gacgggggcaaggatgaggaatggtatgagccgtcgacagacgtcagggcccagctccgc
ttttttgagcagctggaaaggatggagaaacagaggaaggacgaacaggagagagaggtc
ctactcaaggctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaag
gcgaaagctaaggagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaac
ctcactgccctggctgccatcgggccccgtaagaaacgcaagatggactcgccagggggc
tccacatcgggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcc
tcccgccaacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgc
ctggagcaggagagggccacatccaggtccttattgctttataaagctctcctgaagtag
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