Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375016
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Entry
139375016 CDS
T10872
Name
(RefSeq) nesprin-3-like
KO
K21761
nesprin-3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139375016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139375016
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
139375016
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KASH
Spectrin_SYNE1
NBAS_11th
Motif
Other DBs
NCBI-GeneID:
139375016
NCBI-ProteinID:
XP_070972478
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Position
19:29001443..29052996
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AA seq
1299 aa
AA seq
DB search
MTEQEQQEFIDSLEAVQSWIHVVQERLRVNDNTQGPRAALQARLRETEKIHESEHEGRVK
MDMVLVAAEVLLQNGDQETRSKTHAKLKELKASWEETCTFIIHCHSRIEWVWLHWSEYLK
AHEEVEMWLVRMRRSLEPEVELQLGVKEKLWQVDHQHVLLSDVQSQALLLERLLDEAAAL
HNRTQDPSVDQEAQERLQEAYNSIRDSAEERLSVLQKIAEEHQIYQSYVLKFQAWLVSKA
KELNTLTESEDTAENNLQALQTLDDSVASEERTLQHIEGMVEAVRANTSPGGVEVVEEEV
EELRLAWQRLRQSLCEAGEGLRSSLDSQSQYQSHCQRLGEDIAQLQALLHRLTRDLETAR
EGDRTEEQMVGQWRKYMNVRNTLSAEESQVENLKAQLKELFRFSQDSRHLSDDVLAVVKE
HQSVKCRAMKLCVESETGLRLVLQDPLHGFSQWSQLVSQVLEASAEVSEFSHIALLVQNI
ERLMMQSLQLQERLSLLQVKRDLLVSVFGSDRAESLLTELNAAVKNRELLHSKLLQRKGR
LQGLISRTKDFGDAYESIRSKLTLLRDRLISADILQPDILAKKSQSDQLRGIKKDLEDCE
AHITALETLVSSSSTNKTRSERLYGDWRNLYKAVRVKGNESEESIREHESFHESLLNVEK
WLMIMRQKLESYRSSAGEWSVDNRQHEAERALGEFPEKELQLHQTEVEGQGVLKRTSEEG
RVHILRDMKRLRESWMALHDLSLNLFRLLNGHSSSEDHDLDIQRVRGQAGELTCPARELF
PGEGGDLIKGRGSSSRIEGAPEGSPGEDHGVYVSQSYRSGSGRGGRTGSGARMEQSEGAS
FRAEEGVWVEEGFESSVEDIDLSEHGERQGSGQQGPMALSQGSSQRPGQGSGVESSGNCR
EKGGGEHSFGVEEVDSIAWRGGYGQGGEGETRGGTTGINSSGHTGGRNPQCGVVGGSGSR
SSGVVGGSGSRSSGVVGGSDFTGSGVMEGSGSRSSGVVVVGASGSSSSGRTEEWVDEQRS
RGVAEPVVMEVDVGLGQGHSQGSISSYREGTSEMGDQSGSGGGHPRHRGSFTLIKTKMED
PVMDQGFARKTSGGLQSSSQHTTADPGSALSAAEYEDRRRIFEAWLQKENDTLSGILNTK
GPLSTRELKIRQKTLKTLRSSLGWGQEQFQLLLMSGAAASGSGDGADHWAEDVGMEEIRY
RWMLYKSKLKDVGDLKALLNVKGASAAGQEEHTRTAKGKTPGLLYRVCRVALPLWLLLLA
LLLFAFFLPWMDEGSSCSLSNNFARSFNIMLRYDGPPPT
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggagcagcaggagtttattgatagcctggaggcagttcagtcctggata
catgtcgttcaggagaggctccgggtcaatgacaacacccagggcccccgagcagccctg
caggccaggctcagagagacagagaaaatccacgagtctgagcatgagggtcgcgtgaag
atggacatggtgctggtggctgctgaggtcttactgcagaacggagaccaggagaccagg
agcaaaacccacgccaaactcaaagagctcaaagcatcatgggaggagacctgcaccttc
ataatccactgccacagccggatagagtgggtgtggctgcactggagtgagtacctgaag
gcgcacgaggaggttgagatgtggctggtccgcatgcgtcgcagtctggagccggaggtg
gaactacagctgggggtgaaggagaaactgtggcaggtggaccaccagcatgtcttgctg
agtgacgtgcagagccaggcactgctgttggagaggctgttggatgaggctgcagcgctg
cacaaccgtacccaggaccccagtgtggaccaggaggcacaggagagactgcaagaggca
tacaacagcatacgggacagtgctgaggagaggctgtcagtgctgcagaagatagctgaa
gagcaccagatttaccagagctacgtcctaaagttccaggcctggctggtgtccaaagct
aaggagctgaacacacttactgagtcagaggacacagctgagaacaatctccaagcccta
cagacgctggacgacagtgtggccagtgaggagcggactctgcagcacatcgagggcatg
gtggaggcagtgcgggccaacacgtcgcccgggggggtggaggtggtggaagaggaggtg
gaggagcttcgtctggcctggcagaggctccgacagagcctgtgtgaggctggggagggc
ctaaggagcagcctagactcccagagtcagtaccagagccactgccagcgcctgggggag
gacatagcgcagctccaggccctgcttcacagactgaccagagacctggagacagccagg
gagggagacaggaccgaggaacagatggttgggcagtggaggaagtacatgaatgttcgg
aatactctgtcagcagaggaatcccaggtggagaacctcaaggcccagcttaaagaactc
ttccgcttttcccaagattcccggcatctctctgacgacgtcctggctgtggtgaaggag
caccagagtgtgaagtgtcgcgcaatgaagctatgtgtggagtcagagaccgggctgaga
ctggtgctgcaggaccctctgcatggcttctctcagtggagccagctggtctctcaggtg
ctggaggcctcagcagaggtgtctgagttctcccacatcgccttgctagtgcagaacatc
gagaggttgatgatgcaaagtctacagctgcaagagcggttgagtctgctgcaggtgaag
agagatctgctggtttcagtgtttggctctgacagagcagagagtctactgacggagctc
aacgccgccgtgaagaaccgagagctactgcacagcaagcttctgcagagaaagggaaga
ctgcagggtttgatctcgaggacgaaggactttggcgatgcctacgagtcaatcaggagc
aagctgaccctcctgagagacagactgatctcagcagacatcctccaaccagacatactg
gccaagaagagccagtcagaccagctacgggggatcaagaaggacttggaggactgtgag
gcccacatcacagctctggagactctggtgtcatccagctccactaacaagacccggtct
gagagactgtatggggactggaggaacctatacaaggcagtccgggtgaaggggaacgag
agtgaggagagcatcagggagcacgagagtttccatgagagcctgctgaatgtagagaag
tggctgatgattatgaggcagaagctggagtcctaccgcagttctgctggggagtggagc
gtggacaacagacagcatgaagctgagagggcactaggtgagttcccagagaaggagctg
cagctgcaccagacagaggtggagggccagggggtgctgaagaggacctctgaggaggga
cgagtacacatcctcagggacatgaagcgcctgagagagtcctggatggccctgcatgac
ctcagcctcaacctcttcaggctgctgaatgggcacagctcctctgaggaccatgactta
gacatccagagggtgagaggtcaggctggggagttgacatgcccagctagggagctcttc
cctggggagggaggagacctgatcaaaggaagaggctccagcagcaggattgagggtgct
ccagagggatccccaggagaggaccacggtgtctatgtctctcagagctatagatcaggg
tctgggagagggggaagaacagggtcaggggcaaggatggagcaaagcgaaggggcaagt
tttagagcagaagagggtgtgtgggtcgaggaagggttcgagagcagtgtggaggatata
gatctctctgaacatggggagagacagggcagtggtcaacagggtccaatggcgttaagc
caaggaagcagtcagagaccgggacagggcagtggggttgaaagcagtggcaattgcagg
gagaagggtggcggtgagcacagttttggtgttgaggaggtggactccattgcctggaga
ggggggtatggtcagggaggagagggggagaccagagggggaaccacagggataaactcc
tcaggccacacaggaggcagaaacccccagtgtggagtggtggggggctctgggtccagg
agtagcggagtggtggggggctctgggtccaggagtagcggagtggtggggggttctgat
tttacaggtagcggtgtgatggagggatcaggctctaggagtagcggagtggtggtagtc
ggggcgtctgggtccagcagtagcgggcggacagaggagtgggtggatgagcagaggtcc
agaggtgtggctgaacctgtggtcatggaggtagatgtggggttagggcaaggtcatagt
cagggcagcataagcagctatagagagggaacaagtgaaatgggagaccagagtggaagt
ggagggggacacccgcgacacagagggtccttcaccctgatcaagacaaagatggaggat
ccagtcatggaccaaggctttgctagaaaaacttctggagggctacagagctcaagtcaa
cacaccacggcagatccagggtcagctctgagtgcagcggagtacgaggacaggaggagg
atttttgaggcctggctacagaaggaaaacgatactctttcagggattctcaacaccaag
ggaccactgagcaccagagaactcaagatcaggcagaaaacactcaagactttgcggtcc
agtctgggctggggtcaggagcagttccagctactgctgatgtctggggcggctgcatcc
ggatccggggacggggctgaccattgggctgaggatgtgggtatggaggagatacgttat
cgctggatgctctacaagtccaaactgaaggatgtaggagacctcaaggctctgttgaat
gtcaagggtgcaagtgctgctggacaggaggaacacaccagaacagctaaggggaagact
ccaggcctgctgtaccgtgtgtgtcgggtggccctgcccctctggctcctgctgttggcc
ttactcctcttcgccttcttcctgccctggatggacgaaggctccagctgctctctgtcc
aacaactttgcccgctccttcaacatcatgctacgctacgacggacctccacccacatag
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