Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375038
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Entry
139375038 CDS
T10872
Name
(RefSeq) probable E3 ubiquitin-protein ligase IRF2BPL
KO
K22383
interferon regulatory factor 2-binding protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139375038
04121 Ubiquitin system [BR:
ocla04121
]
139375038
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
139375038
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Atypical E3
139375038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-2BP1_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
139375038
NCBI-ProteinID:
XP_070972509
LinkDB
All DBs
Position
19:complement(31485517..31488623)
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AA seq
669 aa
AA seq
DB search
MSSAQVSSSRRQSCYLCDLPRMPWAMIWDFTEAVCRGCVNYEGADRIEFVIETARHLKRA
HGFQGGRSPGPPPPPTVKTQSAISAKETVQISHVDGPSKQQQSGMDRYSLSAERPRFDYS
SIGAHASRLPNGMSGPNGFPKPDDGPPELNRQSPNSRRSHGLAAVPGQMNVPPNLLPQTM
LNGPSSATAIAPHSLSSRPPPPSIVGPSLSMAAQSMSEQGKRPGSVSSTDQERDLKEKQR
NAEALAELSESLRNRNEDWGNKPKIVRDTLVTLSNSSPFDVRFKKDHSLVGRVFAFDAVS
KPGMDYELKIFVEYPSGSGNIFSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSG
DWRLLGDLLPESVRFFKEGLGVEMLPQPYIDASCPLLPTALVNIPRALPSTSAPRTGVRK
RKASPEPDSVESALKLSEQEQQRQQWMASQSEALKLTMASGSFGASHGGPPPLGPGHSVH
SSRATPPESAPQNGQSPMAALMSVADTLGNAHSPKDNNSVHSTTSTRHNNSSPVSPASVS
GQRRLASRNGELNLAGTPSQSNAHSGMDQVHAQNIPDSPMANNGPLCCTICHERLEDTHF
VQCPSVPNHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGD
VKVKKERDP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcacaagtatcgtcatctcggagacagtcatgttacctgtgcgatttaccc
cgtatgccgtgggctatgatatgggattttacggaggcagtgtgcaggggttgtgtgaat
tatgaaggtgcggatcggatagagtttgttatcgaaactgcacgacacctcaaacgagct
catggtttccaaggggggagatcccccggtccaccaccgccgcccacagtaaaaacacag
tcggcaatatctgccaaggagacggtgcaaatcagccatgtggatggaccctctaaacaa
caacagtcggggatggaccgctactctctgagtgcggaaagaccccgctttgactactcc
agtattggcgcccatgccagcagacttcccaatggaatgagcggtccaaatgggttcccc
aaaccggacgatggtcccccagaactgaaccgacagagcccgaactcccgtcggagccac
ggtctcgctgcggtcccaggacaaatgaacgttccccccaaccttctcccacagaccatg
ttgaatggaccctcctcggcaacagccatagccccgcatagcctgtccagccgcccccct
cccccatccattgtgggaccctctttgtccatggccgctcagtccatgtcagaacaaggt
aaacgaccaggttctgtgtcaagcactgaccaagagagagatctgaaagagaaacagcgt
aacgcagaggctttggctgagctcagtgaaagtttaaggaacagaaacgaagactgggga
aacaaacccaaaatagtaagggacactttggttactctttcgaacagctccccgtttgat
gtgagatttaaaaaggaccattcactcgtgggtagggtgtttgctttcgatgcagtgtca
aagcctggaatggactatgaattgaaaatatttgtcgagtacccaagtggatctggtaat
atattttccagcgcatcaggggtggccaaacaaatgtatcaggactgcatgaaagacttt
ggcagagggctttcctcgggctttaaatatttggagtatgagaaaaagcatggttcgggg
gactggcgactcctgggtgatttgttgcccgaatccgtccgattcttcaaagaggggctg
ggggttgaaatgttgcctcagccctacatcgatgccagctgcccattgctgcccactgct
ttggtcaacatccctcgtgccttgccatctacgagtgcaccgaggactggcgtacgtaag
cgtaaagcctccccagaacctgactctgtagagagcgcgctgaaactatctgaacaagaa
cagcagaggcagcagtggatggccagccagagcgaggcgttaaaactgaccatggcatcc
ggatcattcggtgcctcacacgggggacctccgccgcttggccctggccattctgttcac
tcaagtcgcgccacaccccctgaatctgcgccccagaatggacagtctccaatggccgcg
ctcatgtctgtcgcggacacgttgggcaatgcgcactctccgaaggacaacaactctgtt
cactctacaacatccaccaggcataacaacagcagcccagtctccccagcctctgtttct
gggcagaggcgtttggcttcccgtaacggagagctcaatctggccgggactccctctcag
tccaatgcgcattctggcatggatcaggtccacgcgcaaaacattccagattctcccatg
gcaaacaacggacctctgtgttgtaccatttgccacgaacgtttagaggatacccatttc
gttcagtgtccgtcagttcccaaccataaattctgtttcccttgttctcgagagagcatc
aaagcgcagggagcaactggcgaggtgtattgtcctagcggagagaaatgccccctggta
ggttctaatgtgccttgggcgttcatgcaaggtgagatagcaacaatattagctggggac
gttaaggtaaaaaaggagagagacccatag
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