Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375127
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Entry
139375127 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-2-like
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139375127
04082 Neuroactive ligand signaling
139375127
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139375127
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139375127
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
139375127
NCBI-ProteinID:
XP_070972712
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Position
19:37896450..37938516
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AA seq
456 aa
AA seq
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MSKRLDLSHYLAVFFSMMVLWQSRSRVESSAYASEAFKNNITLFTRILDSLLDGYDNRLR
PGLGDRVTEVKTDIYVTSFGPVSDTDMEYTVDVFFRQSWIDERLKFNGPMNILRLNNLMA
SKIWTPDTFFHNGKKSVAHNMTMPNKLLRIMEDGTLLYTMRLTVQAECPMHLEDFPMDSH
SCPLKFGSYAYTMAEVTYIWTRNASASVEVAGDGSRLNQYHLQGQTVGTETIKSSTGEYT
VMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSI
SARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNVKKKEAS
VTKKNNAYAVAVANYAPNIIKDQGGMPTISKSATSDPNKAKPEVKPEQNKKTFNSVSKID
RMSRIMFPVLFSGFNLVYWATYLNREPVIKDMVPSK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcggttggatttatcacattatctagcggtgttcttttcgatgatggtactg
tggcagtcaagatcaagagtggaatcatcggcatatgcttcagaagccttcaaaaacaat
atcactctgttcacccggatcttggacagtcttctggatggctatgacaaccgattacga
ccaggacttggcgatcgggtgacagaggtgaagactgatatttatgtcacaagttttggt
ccagtgtcagacacagacatggaatacactgtggacgtgttcttccgtcagagctggatt
gacgagcggctgaagttcaatgggccgatgaatatcctgcggctgaacaacctgatggcc
agtaagatctggacgccagataccttcttccacaatgggaagaaatctgtcgctcacaac
atgaccatgcccaacaaactgctccggatcatggaggatggaacactgttgtacactatg
aggttaacggtccaggcggaatgtcccatgcacctcgaagacttccctatggattcacac
tcctgtccactgaagtttggcagctatgcttacacaatggctgaagtgacgtacatttgg
actcgaaatgcatcagcgtcagtggaggtagcaggagatggatccagactgaaccagtat
caccttcagggccaaactgtcgggacagagaccattaaatcaagcacaggtgagtacacc
gtcatgacagcccacttccacctgaagaggaagattggctactttgtgatccagacttac
ctgccctgcatcatgaccgtcatcctctcccaggtctccttctggctcaaccgagagtct
gtacccgccagaactgtctttggtgtgaccactgtgctcactatgacgactctcagtatc
agtgcccgtaactctctgccgaaggtggcctacgccacggccatggattggttcatcgca
gtatgctacgcctttgtgttctctgccctcatcgagtttgctacagtcaactacttcact
aaaagaggctgggcctgggacggcaaaagtgtggtcaacgtcaagaagaaggaggcatcc
gtcacgaagaagaacaatgcctacgctgttgccgtggcaaactacgctccaaacatcatc
aaggaccaaggtggtatgcccaccatctccaagagtgccacctctgaccccaacaaggcc
aagccagaggtcaagcccgagcagaacaagaagaccttcaacagcgtcagcaaaatcgac
cgtatgtcccggattatgttccctgtgctcttcagtggttttaacctggtctactgggcc
acctacctgaacagagaaccagtcataaaggacatggtcccgtccaaatga
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