Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375174
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Entry
139375174 CDS
T10872
Name
(RefSeq) homeobox protein six1b
KO
K15614
homeobox protein SIX1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139375174
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
139375174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
Rrn6_K-rich
HTH_3
YdaS_toxin
HTH_72
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
139375174
NCBI-ProteinID:
XP_070972822
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All DBs
Position
19:39629230..39631752
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AA seq
284 aa
AA seq
DB search
MSILPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT
IWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENSENNNSGNNKQNQLSPLDGGKSLMSSSEDEFSPPQSPDQNSVLLLQGNMSH
PGVSSYPMTGLGGAQPVHGMHGHPHQLQDSLLGPLTSSLVDLGS
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatactaccttcgtttgggtttacccaggagcaagtcgcctgcgtctgcgaggtc
ctgcaacaaggaggtaacttggagaggctcggtcgttttctctggtctctcccagcttgt
gaccacctccacaagaatgaaagtgtactgaaagcaaaggcggtggtcgccttccaccga
gggaacttcagagagctctataagatcctggagagccaccagttttccccgcacaaccat
cccaagctgcagcagctgtggctgaaagcgcactacgtggaggcggagaaattgcgcggc
cgaccacttggagccgtggggaagtatagggtaagaaggaaattccctttgccccgcaca
atctgggacggcgaggagaccagctattgctttaaggagaagtccaggggtgttcttaga
gagtggtacacgcataacccctatccctccccgcgagagaaaagggagctggccgaggcc
acgggactgaccactacgcaggtcagcaactggttcaaaaacagacgccagagagacaga
gccgcagaagctaaagaaagagaaaacagcgaaaacaacaactccggtaacaacaaacag
aaccagctgtctcccctcgatggcggcaagtcgctcatgtccagctcggaagatgagttc
tctccaccacaaagccctgatcagaactctgtgcttttgctccagggaaatatgagtcac
cccggcgtctcctcttaccctatgacgggtctcggtggcgcacagccggtgcatggaatg
cacggacacccgcaccaactccaagactcgttgctgggacctctaacatcgagccttgtg
gatttaggctcctaa
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