Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375320
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Entry
139375320 CDS
T10872
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139375320
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139375320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139375320
NCBI-ProteinID:
XP_070973089
LinkDB
All DBs
Position
19:46992763..47036050
Genome browser
AA seq
1509 aa
AA seq
DB search
MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKQEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDEKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMHLNPLDQRVSSFNKKMLGHFDFGNDSERSEESKKDSQSSQMPMVSDSIFHQ
LAEQLQQQNLEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPDNKIDDSIENQQ
QDMDMDLDDGPEMDEEIFEPEDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHR
KRSRSRSRERKRKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKA
TPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYQARQKLSTGSHKIVSKVIKIAW
ALNKGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEP
VKEAVSQAVSTEPMAATNSQQTQQKAFIQQVSMMPVQLPVAQAVPAGGLVPPPFPVSMTM
PPPGYGPPPTFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPTSLVQPSMSQAQDSMKDSP
YGATVPGSFMPSAIPGQGVFNPLQPGVQTQQGANDKTGQSADGMDAAAELVLQGMQNAMG
RRMGLLGMHPSASLTHPLQQQGLPGQRMPGLMPLDLRPSMLQGAGARFPLMMQQGLSQQS
ILDASLHAQARARAASQMDHFNRAEGAFNRGPNPPNENMSKAEDQPSSRADESQQGRDQD
YRFPPPQEKQSTGLLRTPPPEHRESMGGGGRGGGAGGGGAGGGGMGGGGGRPALLQTPVR
EPARDSVVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEERHGSNQGQN
FPNRFENQNRAGAGGVGAGGPGGGGVGGGPAWSRGGAAAPFTDADMPQDLDERRRAWDRQ
QRERDDREFDLRKEMNGNRRERDSREKDRERERERDRERERDHGRDRDNREREQECDRER
EREKEREKDREREREKEREKDRERERERERNKRGAWTPLLPLPQPLLPTPALTPTLSLAQ
GKSQALLQLQSRLQPKPGFLTKPGLLQTPTLLTRSTSQAPTKFLQAPSQSPTQAKNEALP
RPEPQTESQSSTQNHASPKSESSSQNQSSPQNQSSPQNLVSSQAQLPSPPQAQAQSPPWA
QPLSPPRAQTPPQALSPPPAQLPPQALSPPPAQSPPQALSPPPAQSPPQALSPPPAQSPP
QAPSPHQEITDTQEEPEKLQEKPMEEPEPIEEPPSQLVYGTGLRMDTDVVAKPTPERAPT
PTLSPTPAPLSMSPVLTHRPEEPQCLPGPLDVQQPPQHASSSPKDSGLSEPMEEAEKQPV
VEQTDTEGT
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg
atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagagcgtggagaagtttgttcagaaatgcaagcaagagtacaaggtc
ccaggcctgtacgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacatcatcggaaccttccagcacctctac
cgctgcccctcagatgaaaagagtaagattgtcagagtcctcaacctgtggcagaagaac
gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct
cccagtgtcacccctgtcatgaccagcagggatgctccagtcaacaacgctacgcctggt
accccagcgaccccggccactcctgccaacatcgtgtccagtctgcctgactgggcgtct
cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga
caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct
ctgctgcaggcgctggatgcaggcctggtggtccagctgcaggccctgacggcccagctc
actgctgccgcctcagccaaccccatgcacctcaaccccctggaccagagggtttcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagaa
tccaaaaaggactcgcaatcatcccagatgcctatggtgtctgactccatcttccaccag
ctggcagagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac
cagcagcaccagcagaaggatggaatctttgggtctgagaacacaccccagcagagcagc
agccaatcacagcacccggagccagacaacaagattgatgactccattgaaaaccagcag
caggacatggacatggacctggatgacgggccagagatggacgaagagatcttcgagcca
gaggacaagaagtccaagacgattgacatacagtcaagaacacggtccaggtcacgatcg
agatctcccaggaagagacggtccagatcacggtcaggctctcggaaacgaaaacatcgc
aagcgatcgcggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagc
gagagacatgcccgcgagctagagaaagagcgtcagaagaaaggactgcctccaatccga
tccaagtttctcagtgtgtgcagcaccactctgtgggtgggacaagtagacaagaaggcc
actccgcaggacctcaccaatctgtttgaagagtttggtcagattgagtctatcaatatg
atccctccccgtggctgtgcctacatctgtatggtccacagacaggatgcctaccaagcc
agacagaaactcagcactggttcacacaagatcgtctccaaggtcattaagatcgcttgg
gcgctgaataagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtc
acctacatcccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggc
atgatcgaccaggagactgtcaacgccgagtgggaagcagccaaaaatgcaccagagcca
gtgaaggaagcggtgagccaggctgttagcactgaacccatggcagccactaattcccaa
cagacccaacaaaaggccttcatccaacaagtctccatgatgcctgtgcagctccctgtg
gcccaggctgtccctgctgggggtcttgtgcctccaccattccctgtttccatgacaatg
cccccgccaggctatggccccccgcccactttcctcagagcagggttcaatgcctcccag
cctcctccaggtttcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagct
cctacatctctggtgcagccctccatgtcgcaggctcaggacagcatgaaggactccccg
tacggagccactgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttc
aacccgcttcaacctggagtccagacgcagcaaggagccaatgacaagacgggccaatct
gctgatggcatggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgggt
cgtcgtatgggtcttctgggaatgcacccctcagcctccctcacccaccccctacaacag
cagggcctgcctggccagaggatgcctgggctaatgccgctggacctccggcctagtatg
ctccagggagccggggcccgcttccccctcatgatgcagcagggcctgtcccaacagagt
atcctggatgcctccctccatgcacaggcccgcgccagagcggcctcccagatggaccac
ttcaacagggccgaaggggccttcaaccggggtcccaaccccccaaatgaaaacatgtct
aaggctgaagaccagccttcctctcgggcagacgagagccagcaggggagggaccaagac
taccgcttccccccgccccaggagaagcagagcacaggcctgctgaggacacctcccccg
gagcacagagagtccatgggtggaggtggacgtggtgggggagctggtggtgggggtgct
ggtggtgggggtatgggtggaggaggaggcagacctgccctgctgcagaccccagtgagg
gagccagctagagacagcgtggtagggcggcttcaggccctcgccggcttcaccccccag
acccagagtcgctgggggccacctagaggggactttgatgagcgtgacatgcggggctca
ccagccggggtctccaagggcttccaggaggagcgccatggctccaaccaggggcagaac
tttcccaaccgctttgagaaccagaaccgcgctggggcaggaggagtaggtgctggtggt
cctggtggcgggggtgttggagggggcccggcgtggagtcgtggtggagctgcagcaccg
ttcactgatgctgacatgccacaggacttggatgagcgccggcgcgcttgggacaggcag
caacgggagagggacgacagggaatttgacttaaggaaggagatgaacggcaaccgccgt
gagagagatagccgcgagaaagaccgggagagggagagagagagggaccgggagagagaa
agggaccatggccgtgatcgtgacaaccgtgaacgagagcaggagtgcgaccgggagaga
gagcgtgaaaaggagagggagaaggatcgggagagagaacgtgaaaaggagagggagaag
gatcgggagagggaacgtgagagggaacgtaacaagcgtggagcctggacacctcttctc
cctctaccacaacccctacttcctactcctgccctgaccccaaccctctcactggcccaa
ggcaaatctcaggccctgctgcaactacagtccaggcttcaacctaaacctggattccta
actaaaccgggtctgcttcaaactccaaccctcctaactcggtcaacatctcaagcccca
accaagttccttcaagccccatcccagtctccaactcaagccaagaatgaagccctcccc
aggcctgagccccagacagagtcccagtcctctacccagaaccatgcttcccctaagtct
gagtcctcatcccagaaccaatcctctcctcagaaccagtcatcaccccaaaacctggtt
tcctctcaggcccaattgccgtcccctccccaggcccaggcccagtccccgccatgggca
cagcccctgtccccaccacgggcacaaacgccaccacaggccctgtccccaccacctgca
cagttgcctccccaggccctgtccccaccaccggcacagtcgcctccccaggccctgtcc
ccaccacctgcacagtcgcccccccaggccctgtccccaccaccggcacagtcgccaccc
caggccccgtcgccacaccaggagatcactgacacccaggaagagccagagaaactccag
gaaaaacccatggaagagcctgaaccaatagaggaacctccatctcagttggtctatggg
acggggttgaggatggacactgacgtagtggctaagcccacacctgaacgggctcccacc
cctaccctctcccccactccagccccactctcaatgtctccggtcctcacacatcgccct
gaggaaccccaatgcctgccgggacccctggacgtgcagcaaccaccacagcatgcctcc
tcctcccctaaggacagtggactgagtgagccgatggaggaagctgagaaacagccagtg
gtagagcaaactgacactgaggggacataa
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integrated database retrieval system
