Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375429
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Entry
139375429 CDS
T10872
Name
(RefSeq) contactin-1a-like
KO
K06759
contactin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Contactins
139375429
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
Others
139375429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139375429
NCBI-ProteinID:
XP_070973313
LinkDB
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Position
2:complement(86951227..87178279)
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AA seq
1020 aa
AA seq
DB search
MLHFTVLLLCLLSLTLTSTDAVFRGEPGFYSDDATGYGPVFEDQPVDTIYPEESPEAKIT
MSCRARANPPATYTWRLNSRNIDQDEDNHYTLVGGNLVISNPIKNKHVGKYTCKATNDYG
TVVSREAAVQFGYLDFFSSEEREAVYVKEGQGAVLLCAPPPHYPDELSFRWILNEFPVFI
PLDKRRFISQTTGNLFISKVDSSDSGNYSCFVSSASIAKSVFSKFIPLVPLAERPIRKYP
ADIKVKFPDTFALVGQNITLECFALGNPIPQIRWRKMDGELPTNHEVSMAGAHLQLYHVQ
YEDEGTYECEALNSKGKDWHRARVSVEAFPEWTESISSTERDISSDYTMSCEASGKPKPH
VHWLKNGYPYDKHDLKFRGLTFEDSGMYQCRAENRHGVVYADAELRVIACAPTFEHNPVK
RRILGAKNGRVVLECRPKAAPKASLSWSKGSELLFNSSRMLIWEDGSLEILNVTRADEGR
YTCFAENDRGKANSTGFLSITEATKITLAPSNADVTAGESASMQCAASHDSSLDITFVWT
MDGRSIDFDRDGSHYERNPNGGSSGELIIKNTQLNHSGRYTCTAQTPVDNVSASADLVVR
GPPGPPGGVRVEEIRNKSVRLIWSSGADNHSPISKYTVQCRDWFSKEDWRDATTSPPDVE
GNAETATVVDLFPWTEYEFRVIATNTLGTGDPSSPSPKVTTLEAVPVVAPSDIGGGGGTS
KELTITWTPVQPQYYYGRNFGYIIAFKPHDVYDWMKVTVADPEAKHYVHKDSSIPASTEF
QVKVKAFNIKGEGPYSLTAVIYSAQDVPSEAPTSVEARALSATEAIVWWLPVTQHTVEGY
QVRYWMKVEDREASSQRVVVSSRENQTRLENMRPNSPYLIEVRAYNAAGYGPPSHHFQIY
TKKAPPSRPPKIISKKLKGTSVNIAWEHVEPLANESTIDGYKVLYRKAGLSTGLLYTTGK
RSIDLPMPRDGDCVVEVRAYSEGGDGAVAQVRISGGAVMVTQSLSLASLLLVAMLCLLAL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacttcactgtgctcctcctctgcctcctgtccctgactctcacttccactgat
gcagtgttcagaggggaacctggcttctactcagacgatgctacaggttacgggccggtg
tttgaggatcagccggtcgacaccatctacccagaggagtcacctgaggccaaaatcacc
atgagctgtcgagcacgagccaacccacctgccacatacacgtggagattaaacagcagg
aatatagaccaggatgaagacaaccactacactttggtgggaggcaacctggtcatctct
aaccccatcaagaacaaacacgttgggaagtacacctgtaaggccaccaacgactacggc
actgtggtcagcagagaggccgctgtccagtttggatacctggacttcttctcctctgag
gagagagaggcggtgtatgtgaaggagggccagggggcagtgctgctctgcgctcctccc
ccacactacccagacgagctgtcattccgctggattctgaatgagttccccgtcttcatc
cctctggataaacgtcgcttcatctctcagactacggggaacctcttcatctctaaggtg
gactcgtctgacagcggaaactactcctgcttcgtctccagtgcctccatcgccaagagc
gtcttcagcaagttcatccccctcgtccccctggctgaacgcccaataaggaagtaccct
gctgatatcaaagtcaagttcccagacacctttgcactggtgggccagaacatcacactg
gaatgcttcgccctgggaaaccccatccctcagatccgctggaggaagatggacggagag
ctgccgaccaatcatgaagtcagcatggcaggggcccacctccaactgtaccacgtgcag
tatgaggacgaggggacgtacgagtgtgaggccctcaactccaaagggaaggactggcac
cgggctcgggtctctgtagaagccttcccagagtggacagagtccatcagcagtacagag
cgggacatcagcagtgactacaccatgtcctgtgaggccagcggcaagcccaagccccac
gtccactggctcaagaacggctacccgtacgataaacatgatctgaagttcagaggactg
acgtttgaggactctgggatgtaccagtgtagagcggagaatcggcatggagtcgtctat
gctgacgcagagctgcgtgtgattgcgtgcgccccgacgtttgagcataacccagtaaag
aggaggatcctgggggctaagaacggccgtgtggtcctagagtgtagacctaaagctgct
cccaaagcctccttgtcctggagcaagggctctgaactcctcttcaactccagcaggatg
ttaatctgggaggatggtagtctggagatcctgaatgtgaccagggcagacgaggggcgc
tacacctgttttgctgagaatgaccggggcaaggccaacagcacaggcttcctctctatc
acagaggccactaagatcaccttggctccgtccaacgcggacgtgacggcgggcgagagc
gccagcatgcagtgtgccgcatcacatgactcatcgctggacatcacgttcgtctggacc
atggacggccgctccatcgacttcgaccgggacgggtcccactatgaacgcaacccgaat
ggtgggtccagtggagagctgatcatcaagaacacccagctgaatcactctggacgttac
acctgcaccgcccagacccccgtggacaacgtctccgcatccgctgacctggtcgtcaga
ggtccccctgggcctccaggtggggtacgtgtggaggagatcaggaacaagagtgtccgt
ctgatctggagcagtggagcagacaaccacagccccatctctaaatacaccgtccaatgc
cgggactggttctctaaggaagactggagagatgccaccacatcccctccggatgtggaa
ggcaatgcagagacagccacggtggtggacctgtttccctggacagagtatgagtttagg
gtgatagccaccaacaccctggggacaggagaccccagcagcccctcacccaaagtcacc
acgttggaggctgttcccgtggtggcgccctcagacattggcggtggtggcgggaccagc
aaggagctgaccatcacttggacgccggtgcagccgcagtactactacggccgcaacttt
ggctacatcatcgccttcaagccccacgatgtctacgactggatgaaggtgactgtggca
gaccccgaggctaagcattacgtccacaaagactcatccatccccgcctccacagagttc
caggtcaaagtcaaggctttcaacattaaaggagaaggcccctatagtctcacggctgtt
atctactctgcacaagacgtgccatccgaagcccctaccagtgtggaggccagggcgctg
tctgccactgaggccattgtgtggtggctccctgtcacccagcacactgttgaaggatac
caggtgcggtactggatgaaagtggaggacagagaggcatccagtcagagagtggtggtg
tccagcagagagaaccagacaaggttggagaacatgaggccaaactccccctacctcata
gaggtcagggcctacaatgcagccggatacggaccccccagccatcacttccagatctac
accaaaaaagcccccccaagccggcctcctaaaataatcagtaaaaagctgaaaggaacg
tcagtaaacatcgcctgggaacatgtcgaacccttggccaacgagtcaacgatagatgga
tacaaggtcttgtacaggaaggctggcctctccacaggtctactgtataccacagggaag
cgatccatagacctgcccatgcccagggacggggactgcgtagtggaggtcagggcctat
agcgagggaggagatggggctgtggcccaagtacgcatctcaggtggagctgtcatggtc
acccagtccctcagcctggcctctctgctcctggtggccatgttgtgcctgctggccctc
tga
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