Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375455
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Entry
139375455 CDS
T10872
Name
(RefSeq) serine and arginine rich splicing factor 5a
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139375455
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139375455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139375455
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
SR proteins
139375455
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
139375455
NCBI-ProteinID:
XP_070973355
LinkDB
All DBs
Position
19:61001159..61007992
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AA seq
311 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGGGGGGGGGRFSPRFSSYRQGSGGHSGGSSRYGPPV
RTEHRIIVENLSSRISWQDLKDLMRKAGEVTFVDAHRTNKNEGVVEFASHSDMKNAIDKL
DGTDLNGRKLKLSEDRKSRHSRSRSRGSRSYSRSRSRSPRSKSRSRSRNRSRSPRSRSAS
RTPEKKPSSAGGGRAAHRSTSRSPSRSRSPAPRSRTPPPRSRSRTPPPSSPAPARKQSPS
RSRSPSVESQH
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgtcgtgtgtttatcggccgtttgagcccccacgcccgtgagagagacgtg
gagaaattcttcaagggatatggacggatccgagaagtaaatttgaagaacggattcggc
tttgtggagtttgacgaccacagagatgcggatgatgccgtatatgagctgaatggcaag
gaactctgtagtgaaagggtgacgatagagcatgcccgctccagaagagggaggggtggt
ggaccagggatggggggtggtggtggaggaggaggaggacgcttctcacctcgtttcagc
agctaccgccagggctctggcggtcatagtggtggctccagtaggtatggtcccccggtg
cgaacggagcacagaatcattgtggagaacctgtcgtcacggatcagttggcaggacctg
aaagacctgatgaggaaagccggagaagtcacctttgtggatgcacacagaaccaacaag
aatgaaggggtggtggagttcgcatcacacagtgatatgaagaatgccattgataagctg
gacggaacggacttgaatgggcgcaagttgaaactgtctgaggatcgcaagagccgccac
agcaggagtcgttcccgcggctctcgtagctactcccggtcccgtagccgttccccgcgc
tccaagtcccgtagcaggagtcgtaaccgctccaggagcccccgatctcgctcggccagc
cgtaccccggagaagaagccttcctctgcaggagggggcagggctgcacatcgctccacc
tcgcgctccccgtcccggtccagatcccctgcccctcgctcccgtacccctcccccacgc
tcccgttctcgcacgcctcctcccagttcccctgccccggcccggaagcagtctccgtcc
cggtctcgctccccctcggttgagagccagcactga
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