Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375531
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Entry
139375531 CDS
T10872
Name
(RefSeq) protocadherin-7-like
KO
K16498
protocadherin delta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139375531
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139375531
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139375531
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139375531
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139375531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
139375531
NCBI-ProteinID:
XP_070973462
LinkDB
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Position
19:8355423..8438715
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AA seq
1352 aa
AA seq
DB search
MTQLPVADSALRYRVAEEGPADVMIGNVAADLGLSAGTGSGDVTFALESGSEFFKIDNVT
GELTTGQRRIDREKLSQCQMIFDENECFLDFEVSVIGPLQSWVDLFEGRVVITDINDNTP
SFPSSVLTLSVEENRPIGTLYLLPTATDRDFGRNGIDRYELIQDGSSSGSAGSGLGSARR
AAGGPMGRADGTGGGGDRRRGALDNNGGGAGGGVRSSVFELQVADTPDGEKQPQLIVKGP
LDREARDSYELVLRVRDGGNPPRSSQALLRVAITDVNDNSPRFERAIYEAEMAENAPPGT
PVLQVRASDRDVGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRIDREEVAQLRFTV
TARDRGQPPRTDRATVVLVVRDENDNVPVVEIRKIGRILVRDGVALVPENVLVDTPVALV
QVSDRDQGENGAVTCTVVGDVPFTLKPAGETALLPLPADDAFDRNRKKYFLHTSALLDYE
ATKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHTPAFAQAVVEVHFAENNQPGERVVT
VVAADADSGKNAEIVYSLDPSVNGLFYIDADNGDIRATGVLDREVRERYEFQVIARDKGF
PSLQGSATVVIMVTDRNDNTPKFVQEVFTFYVKENLLANSPVGMVTVTDADEGENAELSL
FVERGEDTFSIENNTGTIFSSVAFDRERRSTYTFRVRAIDGGAPPRSATATVSLIVTDEN
DNAPSVTSPTNDSYTLLPPASSTRTIVRTVAASDSDFGRNADLRFSLVGGNPFRLFEIGL
ASGVITVAEPLERRHRGLHRLVVRVNDSGEPSLCATALVHVFINESLVNATLVDAQVARS
LAAPLYLDIAGDPDSERALGKQRLSVAIGVLAGAAAVILVILLVVMARQCGAQGKNGYEA
GKKEPEEDFFSPQPAVPQTRGGTLDRGRKPRRDKRNGGAGGAGGAGNKTERPLYSGVVTV
NGLRRHGNDHHHVANVDDDDEDVSSASERLAARYCAVDGDPGSPRMGARHHQSSPDLARH
YKSSSPLPAVHLQPYSPPAEGKKHQAVQELPPSNTFVGSGGSSGSGGSGNADAMSLGSDQ
CSEYGSQTGNKYSKQATLRRVTFSVVPGPQDGCYDSAAEDSETPSSKGSSGPRVGALSLP
EEGYERTTPEGSVGEEEHVENDARQLPDVALTGKCTRECDEFGHSDTCWMPAAIRPSPRQ
HQRQRHVSEPPRLSTFASPGNDNNNNHDDDDEEDSDSESAGSAGSSEPGVVSVGVGGGGQ
RLPLANGDPLGSLVGRDRMNRNMGDHNRNLLNRKMTSASYDTFSSAGFGRRHHEEDRGGQ
GRVNPPEVIPLTRTGDYKTTSCLTLSRREVYL
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgactcagctcccggtcgctgactcggctctccgttaccgggtggctgaggagggcccc
gcagacgttatgatcggcaatgtggctgccgacctcggcctgtccgcgggcaccggctcc
ggagatgtcacattcgccctagagagcggctcggagttcttcaagattgataacgttacc
ggggagctgactaccgggcagcggaggattgaccgggagaagctgtcccagtgtcagatg
atcttcgatgagaacgagtgtttcctggacttcgaagtgtctgtgattggtccgctccag
agttgggtggatctctttgagggccgtgtggtcatcaccgacatcaacgacaacactccc
tcgtttccgtcgtcggtgctgacattatctgtcgaggagaaccgtccaataggcacgctg
tatctgttacccacggcgacggatcgcgacttcgggcgcaatgggattgatcgttatgag
ctgattcaagatggcagctcttccgggtcggcggggtcagggttggggtcagcgaggaga
gcagccggagggccaatgggaagagcggatggaacaggaggaggaggggataggaggaga
ggagcattggataacaacggaggaggtgcaggaggaggtgtgaggagcagtgtgtttgag
ctccaggtcgccgacacgcccgacggcgagaagcaaccacagctgatcgtgaaaggccct
ctggaccgtgaagcacgcgactcgtatgagctggttctacgggtccgggacggtggcaac
cctcctcgctcttcccaggctctcctccgtgtcgccatcaccgatgtcaacgacaacagc
ccgcgcttcgagagagccatctatgaggccgagatggcggagaatgcgcctcccggaacc
cccgtcctccaggtacgcgcgtcggaccgcgacgtcggcgtcaacggacaggtggagtac
gtcttcggcgctgccacggaatctgtccgccgtcttctccgactggacgaggctaccggt
tggctgagcgtcctccacaggattgaccgggaggaagtggcccagttacggttcacggtc
acggcaagggatcgtggtcagccgccgcgcaccgaccgggcgaccgtagtcctggtggtc
cgggatgagaacgacaacgttccggtcgtggagatcaggaagatcggacggattctggtg
agggatggagtggcgctggtaccggagaatgttctggtggacacgccggtggcgctggtt
caggtgtcagaccgggaccagggggagaacggagcggtaacctgtacggtggtcggggat
gtaccgttcaccctgaaaccagcgggagagacggcgctcctgccactgcccgcggatgac
gctttcgacagaaaccgtaagaagtatttcctccacacgtcggccctgttggattacgag
gccaccaaagagtacagcgtgaccatcgtggcagtcgactccggttccccgtctctctcc
agcaacagctctctcatggtcagggtagtggacatcaacgaccacactcctgccttcgcc
caggccgtggtggaggtccactttgccgagaacaaccaaccaggcgagcgtgtggtcacc
gtggttgcggcggatgccgattccggaaagaatgcagagattgtgtattcgttggatccg
tccgttaacggcctgttctatattgatgctgataatggggatatccgtgcaacgggggtt
ctggaccgggaggtcagggagaggtacgagttccaggtgatcgccagggataagggattc
ccctcgctgcaggggtcggccacggtggtaatcatggtgaccgaccgcaacgacaacact
ccgaagttcgtccaggaagtgttcacgttctacgtgaaggagaacctccttgccaacagc
ccagtcggcatggtaacggtaacagacgcggatgagggtgagaacgcggagctgagtctt
ttcgtagaaagaggtgaagacacattctccatagagaacaacacagggacgatcttctcc
tccgtggcctttgaccgggaacgtcgttccacctacaccttccgcgtccgggccatcgac
ggcggggctccgcctcgctccgccacggcgacagtctccctcatcgtaactgatgagaac
gacaacgccccctccgtgacctcgcccaccaacgattcctacaccctcctccccccggcc
tcctccacccggaccatcgtcagaaccgtggccgcctcggactcggactttggccgcaac
gctgacctgcgcttctccctggtaggagggaaccccttcaggctgtttgagatcggcctg
gccagtggagtgatcaccgtggcagagcccctagagaggagacacagggggctgcatcgc
ctggtggtcagggtcaacgacagtggagagccatcgctctgcgccaccgcgctggtccac
gtcttcatcaacgagagtctggtcaacgctacactggtggacgcacaggtggctcgtagt
ctggccgcccctctctacctggacatcgcgggcgaccccgacagcgagcgagcgttgggg
aaacagcgcctctcggtggccatcggtgtcctggcgggcgccgcggcagtcatcctggtc
atcctcctagtggtgatggcgcgccagtgcggcgcccagggcaagaacggatacgaggcc
gggaagaaagaaccggaagaggatttcttcagccctcaaccggccgtgccacaaaccagg
ggagggacgttggaccgcggacggaagccccgcagggacaaacggaacggaggcgccgga
ggagccggaggagccggtaataaaactgaacggccgctctacagtggcgtcgtcacggtc
aacgggctccgtcgccacggcaacgaccaccaccacgtcgccaacgtcgacgatgacgac
gaggacgtgagcagcgccagcgagaggttggcggcgaggtactgcgcggtggacggagac
cccgggagcccacgcatgggcgccaggcatcaccagtcgagcccagatctggccaggcat
tataagtcaagctcgccgctccccgcggtgcacctccagccctacagccccccagccgag
gggaaaaagcaccaggctgtacaggagctgcccccctctaacaccttcgtggggtctgga
gggtccagtggtagtggtggaagtgggaacgctgatgccatgtctctggggtcagaccag
tgttctgagtatggatcccaaacggggaataagtacagcaaacaggcgaccctgcggagg
gtgacgttctccgtggtccctgggcctcaggacggttgctatgacagcgctgcagaggac
tctgagacccccagcagtaagggttcatctggaccccgagtgggggcgctgtctctcccc
gaggaggggtacgagaggaccacacctgagggaagtgtaggagaggaggaacatgtggag
aacgatgccagacagctcccagacgtagccctgacagggaagtgcactagggagtgtgat
gagtttggacactccgacacttgttggatgcccgccgctatccgcccgtcgcctcggcaa
caccagcgccagcgccacgtcagcgagccgccccgcctgtccaccttcgcctcccctggc
aacgacaacaacaataaccatgacgacgatgatgaggaagatagtgacagcgagagcgcc
ggcagcgccgggagttccgaaccgggcgtagtcagcgtgggagttggcggaggaggtcag
aggttaccgttagccaatggggatcctctcggcagcctggtgggcagagacaggatgaac
cggaacatgggcgaccacaaccggaacctactcaaccggaagatgacgtcagcgtcgtac
gacacgttcagctccgccgggttcgggagacgccatcacgaggaggatagggggggtcag
ggcagggtcaaccctccggaagttataccattaactaggaccggggactacaagaccacg
tcgtgcctcacgctctcccgtagagaggtctacctgtaa
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