Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375603
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Entry
139375603 CDS
T10872
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139375603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139375603
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139375603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
139375603
NCBI-ProteinID:
XP_070973494
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All DBs
Position
20:complement(58334954..58355623)
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AA seq
928 aa
AA seq
DB search
MAVQPKQSLSMDAAAEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTEALFAAKEIFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHNWQLEYKAS
PGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRTEFSSKDMTQDLNRL
LRTRKGEANACNVLPELDKQVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDASGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNSVLGYYLRVTCKEEKSLRNNKTFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVIAQLDA
VVSFSVASVSAPIPYVRPRLLAADRRRLELQQARHPCLESDADTAFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCEKAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRAATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSGEEGPEAKKRRSDKREGEVLIQSFLEKVKSLPAVTMTDQEVKAEL
RAMKQELVAHNNAYITELLARSTPIHTT
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagagcttgtccatggatgctgctgccgaacatggcttcctt
acctactacttttccatgccggagaagccagacaccaccttcagggtcttcgaccggggt
gactactacacggtgcacgggaccgaagcgctgttcgccgccaaggagattttcaagacc
aacggagtgatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctgctgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacaactggcaactggagtacaaggcatct
ccagggaatctgagccagtttgaggaggttctatttggcggggctgagggaagaggggct
ggctcagcgggggttgtggccgtacggttggctgtcgggggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgcgagttccttgatgga
gagactttctgtaacctggaggctctgcttgtgcagctgagccctaaggaatgtctgcta
ccacagggtgacaacactgataacatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtagtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaacgcctgcaacgttctgcctgaactagacaaacag
gtagcaatgtcatgcttggcagcagtggttcgttacctggagttgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagccagtacatgaggctggacaac
gctgctgtacaagccctcaacctatttcagggttctcccgatgacgccagtggagcccac
tcattggccgggcttctgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggatcaaacagccactcatggataagaacaggattgaggagagactggacctggtagag
tgcctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccggctctcggcaacactgcaggactgt
taccgcggttaccaggctgtgggccagatccctgcacttctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggccgtgttcatctctcctctcagagacctgcag
gctgacttcattaagtaccaggagatgatcgaaactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagcgtactgaacagcgcagcacgggaactgggt
ctggatgctggtaagacggtgaagttggagtgtaacagtgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaacgttcacaacgctggacgtc
cagaagaatggagtccggttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggttacgtggaccccctgcagtcgttgagtgacgtcattgcccagctggatgcg
gtggtcagcttctctgtggcgtcagtctctgcccccatcccctacgtcaggccacgcctc
ctggctgcggaccgcaggcgcctggagctccaacaggccagacacccctgcctggagtcg
gacgcagacacagccttcatacctaatgatatatccttcatacagggggagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaaggcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcaggggatagccagctcaagggcgtgtctaca
tttatgtccgagatgctggagactgcagctattctccgcgctgccacgaagaactctcta
ataataatcgatgagttgggtcgcggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacatcgcctcgaagattggctgcttctgtctgtttgccactcacttc
catgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccactcaacacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcgtgtttcccgccggcggtggttgccatggca
aagcagaaggctgcagaactggaggagtttcaggaggagccgagtggggaggaggggcca
gaggccaagaaacgacgcagcgataaacgggagggagaggtattgatccagtcgtttctg
gagaaggtgaaatctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
agagccatgaagcaggagcttgttgcccataacaacgcctacatcactgagctcctggca
cgctccacccctatccacacaacctga
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