KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375949
Entry
139375949         CDS       T10872                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein-like
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03010  Ribosome
ocla04120  Ubiquitin mediated proteolysis
ocla04137  Mitophagy - animal
ocla04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    139375949
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    139375949
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    139375949
   04137 Mitophagy - animal
    139375949
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:ocla03011]
    139375949
   04121 Ubiquitin system [BR:ocla04121]
    139375949
Ribosome [BR:ocla03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    139375949
  Archaea
    139375949
Ubiquitin system [BR:ocla04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   139375949
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 139375949
NCBI-ProteinID: XP_070974028
LinkDB
Position
20:complement(13430823..13437649)
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaaaacgttgacgggtaaaaccatcacccttgaggtggaacccagt
gacaccatcgagaatgtgaaggccaagattcaagacaaagaaggtattcctcctgaccaa
cagcgactcatcttcgctggcaaacagttggaggatggccgcacattgtcagactacaac
attcagaaagagtccactctgcatcttgtgctgcgtctgagaggaggtatcatcgagcct
tccctgagacagctggcacagaaatacaactgtgacaaaatgatctgccgcaaatgctat
gcacgtcttcacccccgtgcagtcaactgccgcaaaaagaagtgtgggcataccagcaac
ctgcgccccaagaagaagctgaagtaa

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