KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375971
Entry
139375971         CDS       T10872                                 
Name
(RefSeq) roquin-1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139375971
   04121 Ubiquitin system [BR:ocla04121]
    139375971
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    139375971
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139375971
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf-CCCH_UNK zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C Baculo_IE-1 zf-RING_6 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 139375971
NCBI-ProteinID: XP_070974060
LinkDB
Position
20:14293140..14321850
AA seq 1110 aa
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKVQPVALITSPEDLQHYEEARQCVDELALYLKPLSNNRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGLALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSSGLLSDDCLPLDMGVTRNTS
PLTNGSAGHPMPQLITRGTDAVTYDLLCKPNIDGGSSSSPGSPPDSLDSGPKQGFLQPPL
AMGHPMGSGDPMPKQMPVGVMPRGPQMYPQQLPDMYYSDSRPLPSASQYEPSQYPQGYPY
QQPPQYSTQRYIRNLPTPSEPAGPPYQDPYPGYGPPERPYPAPHSGTPYSYLPHYDTRGR
HGPYPGPQPYPSQRDDIVRMSPAPLDMPPNHHYQQEQAARGRYPPEGYYPTGAQPQSMRS
NVREQYRRSSQPSLDYLHHRRKELMAQLEERKVISPPPFAASPTLPHAFPSDYPPEYGEE
SSKAFGKCREPDYAGQYSPWSCDTIGSYIVTKDAKPKDIMTPGAMEMMNVDGKGLRGEPS
MEAQARRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASAQGPKHMAA
EFSYGHHGGWGGASYPSHQTGFSSQGHFSEKLSMPAQDREHLKIELQQVNQQITQQTHTH
GMEREVSALAAQPSQPCQNQGQQGKWPGPVGVSSNAALVSSEQLSMELHQVEREIGKRTR
RIDMDSQVAHEVQYKMKAAQNGQQDHKTQLEEIALALGEVSNGSSGLGQDGGVGGAMLSL
TNKASSLSLCSEPGPGVSELQKNGMVHSCS
NT seq 3333 nt   +upstreamnt  +downstreamnt
atgcctgtgcaagccccacaatggacggagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtgcggcggcccatctcgctgggctgtggccacaccgtctgcaagatg
tgcctgaacaagctccaccgcaaggcctgcccctttgaccagacagccatcgccaccgac
atcgagcagctgccggtaaacacagccctactgcagcttgtggggggacaggttcccaag
gttcagccggtggccctgatcaccagcccagaggacttgcagcactatgaggaggctagg
cagtgtgtagatgagctggccctctacctcaaacccctcagcaacaacagaggggtgggt
ctaagcagcacagcccagagcatgctgagtcggcccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgtgtgcgggccatgagggcagccaggtct
ctgggggagcgcacggtcacagagctcatcctacaacaccagaacccccagcaattgtca
tccaatttgtgggctgccgtccgggcccggggatgccagttcttgggcccagccatgcag
gaggaggctctgaagctggtgctgctggctctggaggatggcttggccctgtccaggaag
gttctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc
agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcga
gacgaggactcgtccctgatgcagctgaaagaggagttcaggacgtatgaggcactgcgg
cgtgaacacgattcccagattgtgcagatcgccatggagggtggcctccgcatcgctccc
gaccagtggtcctccctgctctatggggaccagtcccacaagtcccacatgcagtccatc
attgacaagttgcaaacgccagcatcgtttgcccagagcgttcaggagctgaccatcgcc
ttgcagaggacgggcgaccccgccaaccttaatcagctccgaccacatctggaactactg
gccaatatcgaccctagccccgacgccccccctcccacgtgggagcagctggagaagggt
ctggtggcggtgaagacggtggtccacggcctggtggacttcatccagaaccacagcaag
aagggagccgacccacaacagcctccccagcacagtaaatacaagacgtacatgtgtcgg
gacatgaagcagaaggggggctgtccccgaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccgtaagatgaacaagcgtttggcagctcgcctccctggctcc
tccggcctgctgtcggatgactgtctccctctggacatgggggtgacccggaacacctcg
ccccttaccaacggctcagctggacaccccatgccccagctcatcacccgcggcacggac
gccgtgacctacgacctgttgtgcaagcccaatatagacggcgggagcagcagctccccg
ggatcgccccctgactctctggattcagggcccaaacaagggttccttcagcctcccctt
gccatgggccaccccatggggtcaggcgaccccatgcccaaacagatgcccgtaggtgtg
atgccccgggggcctcagatgtacccccagcagctgcctgacatgtactactccgactca
cgtccactgccctccgcctctcagtacgagccttcgcagtacccccaaggatacccctac
cagcagcccccccagtactccacccagcgctacatccgaaacctccctacccccagcgag
cccgctggacccccctaccaggacccctatcccggctatggccctcccgagcgcccttac
ccagctccccactccggcaccccctactcctaccttccccactatgacacccggggccgc
cacggcccttaccctggcccccagccatacccatcgcagagggacgacatagtccggatg
agccctgctcccctggacatgccccctaaccaccactaccaacaggagcaggcggccagg
gggaggtaccccccagaggggtactacccaactggggcccagcctcaatccatgaggtcc
aacgtcagggagcagtacagacgctcctcccagcccagcctggactacctgcaccatcgc
cgcaaggagctgatggcccaactagaagagcggaaggtcatctccccaccacccttcgct
gcctcccccacccttccccatgcctttcctagtgactaccccccagagtatggggaggaa
agctccaaagcctttgggaagtgcagggagccggactacgccggccagtattctccctgg
tcctgtgacactatcggctcctatattgtcaccaaggacgccaagcccaaagacatcatg
acgcccggcgccatggagatgatgaatgtggatggtaaaggtctacggggggagccctcc
atggaggcccaggccaggcggggggcggaggtcaaagacgacgaccccatcatccccttc
ggcccccagcccaccgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac
cagacgacaggccccgtgcaggccatggcctccgcccagggacccaagcacatggccgcg
gagttctcctatgggcaccacggaggctggggcggcgcctcctacccctcccaccagact
ggcttctcctctcagggacacttcagtgaaaagctgtctatgccagctcaggacagagag
catctgaagattgagctccaacaggtcaaccagcagatcacccaacagacccatacccac
ggcatggagagggaggtcagtgccctggcggcccagccctcccaaccatgtcagaaccag
ggccagcaggggaagtggcccggtccagtgggggtttccagcaatgctgccttggtgtct
agcgagcagctcagcatggagctgcaccaggttgagagggagattggcaagaggacccgc
cggatagacatggacagtcaggtggctcatgaagtccagtacaagatgaaggctgcacag
aatggccagcaggaccacaagacccagctggaggagattgctctggccctcggtgaggta
tctaatggctccagcggtctaggtcaggacggtggtgtgggcggagccatgttgtcactg
accaataaagcgtcttcgctcagcctgtgttctgagccggggcccggggtctcagagctg
cagaagaatggtatggtccattcctgctcctag

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