Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139375990
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Entry
139375990 CDS
T10872
Name
(RefSeq) histone deacetylase complex subunit SAP130-like isoform X1
KO
K19192
histone deacetylase complex subunit SAP130
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139375990
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
139375990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP130_C
Motif
Other DBs
NCBI-GeneID:
139375990
NCBI-ProteinID:
XP_070974104
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All DBs
Position
20:15399878..15418194
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AA seq
1033 aa
AA seq
DB search
MSSQQYSRPGIPPGMGKKQIPGGNTAMVASSQPNTTGGTDDSSRDPHPDHSPYDRPSGGS
GAPGFRDDKQETVVVRPYPQVHGPSQGHHPTLPQHLPLQQGMPVTVSAPPPHIPQGLPLA
FTEGPIKVQSSLKSPMPSRVIAPAPANIQGHISLPPKVPSHLTVTMESTVPPTPGIPVAT
ISGQQAWRFQGNPSNLHHHVQIIRSNGPPLQLGSTGIPQHTFTSHLPRGAAAAAVMSSSK
GPTVLRPATGPGSGTGPPTVQHIIHQPIQSRPIVTTSTAVLPTVVAPVTATRPQSPVVSS
ATHSAEMVHGRPGLTVHPPPATLSIQRPPQSRETPTRITLPSHPAIGGQKPQLYNTMAQK
PIFSNVTPVAAATVAPILATNTAPSPSTTGSGPHPNSNIVTMAMPSHSSHATAVTTSNIP
VAKVVPQPIAHTSPRIQPEYPGERGNLIPISGPRSSPNPITMEARSDNRQPVPVQFQYFL
PTYPSSSYPLTHTYTPITSSVSTIRQYPVTPQAPSGTAMQTQASVGVASAVHLNPMQLMT
VDRIAQINTQNIQPATMATQGIKSTNISTQGLHTATGQITAPNIQPVPINQQQPAIENKT
SVVLADCSTLVANPLGQTFGSSQPPTCVGQTHPQNTGPGAPTLLSSPRPSILRKKPANEG
SAVRKNLIPEATSPRIDGGIRPASGMKHKADLHVSLAPPLTSSSMEALPSHQINEQQPSQ
PIQTLLSVSAPPHSQPGPAMSAITPPISSMANVVVPPTQAAASSTAACGISSTLPELKIK
QEVESMDTSKAGPPMPHCGAPMLSMMPGGDVILGASPRKKPRKQQHVISTEESEMMETNS
TDEEKVLARPHSMRPEKRKSPPKEYIDEEGVRYVPTRARPPVTLLRHYRNPWKAAYHHFQ
RYSDIRVKEEKKGTLQDVANQKGVVCRAQGWKMHLCAAQLMQLTSLEHDVYSRLTTLQEG
LIPKKKAGSDDDMHRINELIQGNMQRCKLVMDQITEARDAMMKVLDHKEKVMKLINKNGG
AKKVNKLKRKDKA
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcaacaatattcacgaccgggaataccccctggtatgggaaaaaaacagatt
cccggaggaaacactgcaatggtggctagtagtcaaccaaacacaacaggtgggacagac
gatagcagccgtgaccctcacccagaccacagtccttatgaccgccccagtggtggtagt
ggagcaccggggttcagagatgacaagcaggagacagtggtggtccggccttacccccag
gtccacggcccctcccagggtcaccacccaacactacctcagcacctgcccctccagcag
ggcatgcccgtcacagtgtcagctcctccaccgcacattccccagggcctgcctctggcc
ttcactgaaggacctataaaggtgcagtcatctctgaagtcacccatgcccagtcgagtg
attgccccagcaccagccaacatccagggccacatctccctgccacccaaggtgccaagc
cacctcactgtaaccatggagagcactgtgcctccgacccccggcatccctgtagcaact
atcagtggccaacaggcgtggcgtttccagggcaaccccagtaacctgcaccatcacgtg
cagatcattcgcagcaacggcccgcccctgcagctcggctccactggcattccccagcac
acctttacctcccatctaccccgaggagctgctgcagctgctgtgatgtccagttccaaa
ggacccaccgtactgagacctgctacaggccctggtagtggtactggcccacctactgtc
cagcacatcatccaccagcctatccagtctcggccaatagtaacaacgtccacggctgtg
ttgcccacggtggttgccccggtaactgccaccaggcctcagtccccagtggttagctca
gccacgcactccgccgagatggttcatgggcgtccagggctgaccgttcacccccctcca
gccactctgagcatccagcgtcctccccaatctcgggagacccccacacgcatcaccctg
ccctctcaccctgccattgggggtcagaaaccccagttgtataacaccatggcacagaag
cccatattcagcaatgttactcctgttgctgcagcaactgttgcccccatattagccacc
aatactgctccatcgcctagcactacaggctcaggaccccaccccaacagtaacatcgtc
accatggcgatgccctctcattcctcccacgccacagcagtcaccacgtccaacatcccc
gtggctaaagtggttccccagccaatagcccacacctcgcccaggatccaaccggagtac
cctggagagaggggcaacctgatccccatctcaggcccccgctcctcccccaaccccatc
accatggaggcccgcagtgacaacaggcaaccggtgccagtgcagtttcagtacttcctg
cctacctacccttcttcgtcgtaccctctgacacacacctacacccccatcaccagctct
gtttcaaccatccgacagtacccagtaacccctcaggcccccagcggcacggccatgcag
acccaggccagtgtgggcgtagcgtcggcggtgcacctcaaccccatgcagctgatgacg
gtggaccgtatcgctcagatcaacacgcagaacatccagcccgccaccatggccacgcag
ggcatcaagtcaaccaacatcagcacccagggcctgcacactgccaccggtcagatcact
gcgccaaacattcaacctgtgcccatcaaccaacaacagccagccattgagaacaagacc
tcagttgtgttagcagactgctccactctggtagccaacccccttggccagacgttcggc
agcagccagcctcccacctgcgttgggcagacacacccccagaacactgggcctggtgcc
cccaccctgctgtcttccccccggcctagcatcctgcgcaagaagcctgccaatgaaggg
tctgctgtgaggaagaacctgatcccagaggccaccagccccaggatagatggaggcatc
aggcctgcatcaggtatgaagcacaaggctgatctccacgtgtccctggctcccccgttg
acgtcgtcctccatggaagcgctgcccagccatcagatcaatgagcagcagccctctcag
ccaatccagaccctcctctcagtgtctgcacccccacactcccagcctggccccgccatg
tccgccataactccaccaatctcgtctatggccaacgtggtggttccgcctacacaggca
gcggccagtagcacagcggcatgtggaataagctccaccctccctgagctcaagataaag
caggaagtggagtctatggatacctccaaagcaggtccccctatgccccattgcggtgcc
cccatgttgtccatgatgcctggtggggacgtgatcctcggggcctcacccaggaagaag
ccccggaagcagcagcacgtcatctccacggaggagagcgagatgatggagaccaacagc
acagacgaggagaaggtcctggccagaccacacagcatgaggcccgagaaacgcaagtcg
ccccccaaggagtacatagatgaggagggtgttcgttatgtccccacccgtgctcgcccc
ccggtcaccctcctccgccactacaggaacccctggaaggctgcctaccaccacttccag
agatacagtgacattcgggtcaaagaggagaagaagggcaccctgcaggatgtagccaat
cagaagggggtggtgtgcagagcacagggctggaagatgcacctgtgtgcagcacagctc
atgcagctgactagtctggagcatgacgtgtacagccgcctcactaccctccaagagggc
ctgatcccaaagaagaaggccgggtcggatgatgacatgcaccgtatcaacgagctcata
cagggtaacatgcagcgctgtaagctggtgatggaccagatcactgaagctagagatgcc
atgatgaaggtgctggaccacaaggagaaagtcatgaagttaatcaacaagaacggcgga
gcgaagaaagtcaacaagctgaagcgcaaggacaaagcctag
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