Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376020
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Entry
139376020 CDS
T10872
Name
(RefSeq) GRB10-interacting GYF protein 2-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139376020
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139376020
Surveillance factors
Other surveillance factors
139376020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
TRI4_N
Motif
Other DBs
NCBI-GeneID:
139376020
NCBI-ProteinID:
XP_070974175
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All DBs
Position
20:complement(16683044..16709352)
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AA seq
1434 aa
AA seq
DB search
MYCHVTHSQPSCGNGERATHNSNTNKPCAVSKSREVLGRMAETQTLNFGPEWLRALSGGG
HGGGSSSSVATSPPLSPAMPKYKLADYRYGREEMLALYVKDREIPVDLHDKDFLPILQEE
PLPPLALVAFTEEEQRNFSMSVNSAAVLRLMGRGGGPVGPGAPRGRSTSRGRGEERALFS
LCPSQQSEEASSACVLFICANQKNRLGRGRGDGGFYQRSFDDVEGGFGRGGREMHRSQSW
EESHAESIFSPSRGDRRFEKPGRKEPEVAPTHFLMNHIRANYEEVGTSVGGLPVRKHDFT
RSESENWRTSRDEVNGEDGEEGGWRLAGTLACALRRDSDRWCPPSPDGPRSAGWREAHPG
EQPRQRRLPFDAREDERGYRHPPSASGSLEEDGGGSLPEWCLEDAEEETGTFDSSGAFLS
LKVRKAPKEPILEEAELDFRPLEECDEGLEEDGHPRETKDTDGEARREPIRKQDVGRAIE
EAPPAPSPPEPLPPSQPDRVEDPEGPLEKPLERPPAPEHRPEANKVPLHTPMSNTMLDSL
SIPHTVAHTLTVSAPSSTIQMQQKPLEVPVAMPAPLPFSASLRPQSTSIMAPNNMATSTG
LMAPIGRPTAMPPHHTMDEDEGLKHFEQEAEKMVAYLQDGDDRLAAKSSATKPAGLPLTH
EAALKWFYKDPQGEIQGPFSNPEMTEWFQAGYFTMTLLVKRGCDEVFQPLGEIIKMWGRV
PFAPGPAPPPLLGDAGDQERLKRQQELTALNLYQLQQLQYQYLLRQQYAQALAQQKAQAL
SSAPHQQQQQQQQQINLLLQQYQALKMRSAENTTSESLLPPVTRSMSVPESQGSVWEMQN
TSQASCTSNIQQPTPSAWEGSSVWDLPIDSMAQAPTIEQMQNLEKNKAAKLELERGEAEL
SAKREEEEHKRQEEEQLARQKQEEALKRQRKQQQEEAQRQQKEEEEERHAQEEALRRLEE
RRREEEEERKQREEFLRKQQEERRKQEELEALKRHEEEKREEEEAAAAVALVRQQQEEAK
RREQEAARQQELARQRQQQQEALRRLQQQQQLAQMKLPSSSKWGQQSAVTAAAISQSQNA
LSLAEIQKVEEERERQAREEQRRQQAEHLKLLQQQALQEARNPQAKLSGWGSVAKQPATT
KSLLEIQREEAQQVKQRKEQGAGGQQPSHPTVTQQNRAQNRATTALSPSVWGSVATSGGA
PNWGGDSSIWGDSTNSNMGFWEEEVAQAPPPARKPNAQKNNKGNANLSSRANKKVEEEEK
LLKLFQGVNKRQQDGFMQWCEKTLHTLNTANNLDVPTFASFLKEVDSPYEVHDYVRAYLG
DTSEAKEFAKQFLERRAKQNANQQKAPPAPQNQQPTLKQQQQDSMWGVSGTGSPSLYQSN
HTSLQQQARFETVTSGKKKKKQKMVRADPSLLGFSVNAASERLNMGEIETVEDF
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgtattgtcatgtgacccattctcagccatcttgtggaaacggagagagagccacacac
aactcgaatacaaataaaccctgtgctgtcagtaaaagcagagaagttctaggaagaatg
gcagaaactcagacactcaacttcggaccagaatggctccgggccctgtctggcggtggc
catgggggtggtagcagcagtagcgttgccacctcaccacctctctcacctgcaatgcca
aagtataaacttgcagactaccgctacgggagagaagaaatgctagcactttatgttaag
gatagggagatccctgtagacctgcacgataaggattttctgcccattttacaagaggag
cccctgccaccactggcacttgtagcatttacagaggaagagcagagaaatttttccatg
tctgtaaacagtgcagctgtgctcaggctgatggggagaggagggggtccggtggggcct
ggggcgccgaggggtcgaagtacctcacggggtcgaggtgaggaaagagccctattctct
ctgtgtccatctcaacagtctgaagaggcttcctctgcttgtgtcctcttcatctgcgct
aatcagaaaaacagactaggtcggggtagaggagacggagggttttaccaaagaagtttt
gatgacgtggaaggaggcttcggacgcgggggcagggagatgcaccgctcccagagctgg
gaggagagtcatgctgagtctattttctccccatctaggggagaccgaaggtttgaaaag
ccaggtcgaaaagagccagaagttgctcctacccacttcctgatgaatcatatccgtgct
aactacgaggaggttgggaccagtgtggggggcctgccagtgaggaagcatgacttcacg
cgttcggagagtgagaactggcgcacgtcccgggatgaagtgaatggtgaggatggtgaa
gaggggggctggcgcctggctggcaccttggcatgtgccttgcgacgggacagcgaccgg
tggtgccccccgagtccagacgggccgcggtcggcagggtggcgagaggctcacccgggg
gagcagccgcggcagcggaggctccctttcgatgccagggaggacgagcgcggctacagg
catcccccgtcggccagcggcagcctggaggaggatggagggggcagcctgccagagtgg
tgtctggaggacgctgaagaggagacgggcaccttcgactcttctggagccttcctttcg
ctcaaggttcgaaaagctcccaaggagcccatcctggaggaggcagagctagacttcaga
cccctggaggaatgtgacgagggtcttgaggaggacggacacccccgggagaccaaagac
acagacggagaggccaggagagagcccatcagaaaacaggatgtggggagagcgatagag
gaggcgccccctgctccctctcctcctgagcccctgccccccagccagcccgacagagta
gaggaccctgaggggccgttggagaagccacttgagcgtccccctgccccggaacacagg
ccagaggccaacaaagtccccctgcacacacccatgtccaacacaatgctggactccctc
tccatcccccacaccgttgcacacactctcacagtgtcggccccgtcgtccaccatccag
atgcagcagaagcccctggaagttcccgtggccatgcccgccccgctgcccttcagtgct
agcctcaggccccagagcacgtctatcatggctcctaacaatatggccaccagcacgggc
ctcatggcgcccatcggaaggcccacggccatgccaccacaccacactatggatgaagat
gagggactgaagcactttgaacaggaagcagagaagatggtggcgtatctacaggacggt
gatgaccggctggctgccaagagctcagctaccaaaccagccggcctgccactcacacac
gaggctgctctgaagtggttttataaagacccccagggagagatacagggtccgttcagt
aacccagagatgacagagtggttccaggcgggctacttcaccatgaccctgctggtgaag
agaggctgtgacgaggtcttccagcccctgggtgagatcatcaagatgtggggcagggtg
cccttcgcccccggcccagcaccgccacccctactgggtgatgccggagaccaggagcgt
ctgaagcggcagcaggagctgacggccctcaacctgtaccagctgcagcagctgcagtac
cagtaccttttgaggcagcagtacgcccaagccctggcccagcagaaagcccaggccctc
agctcagcaccacaccagcagcagcagcaacagcagcagcagatcaacctgctcctccag
caataccaggccctcaagatgaggtcagcagaaaacacaacatctgagtctctcttacct
cctgtgactcggtccatgtccgtaccagaatcccagggttctgtgtgggaaatgcagaac
acctctcaggcctcctgcacatcaaacatccagcaacccacacccagtgcgtgggagggc
agcagtgtgtgggatctgcccatagactccatggctcaggcccccaccatagaacagatg
caaaacctggagaagaataaggctgccaagctggagctggagcggggtgaggcagagctg
agtgccaagagggaggaggaggaacacaaacgccaggaggaggagcagctagcacgtcag
aaacaggaggaggcattgaagaggcagcggaagcagcagcaggaggaggcacagcgccaa
cagaaagaggaggaagaggaacggcatgcgcaggaggaggccctccgcagactggaggag
aggaggagggaggaggaggaggagaggaagcaaagggaagagttcctccgcaaacagcag
gaggagcgccgaaagcaggaggagctggaggccctgaaaaggcatgaggaagagaagcgg
gaggaggaggaggcagcggctgcggtggctttggtacggcaacagcaggaggaggcgaaa
aggagggagcaggaggcggcgaggcagcaggagctagccagacagaggcagcagcagcag
gaggcgctccgccgactacagcagcaacagcagctagcccagatgaagctgccgtcttcc
tctaagtggggccagcagtcagcagtcacggcagcagccatctctcagtcccagaacgcg
ctgtcgctcgctgagatccagaaagtggaagaggagagggaacgacaggcacgagaggag
cagcggcgccagcaggcggagcacctgaagctcctgcagcagcaggccctgcaggaggcc
cggaatccccaggccaagctctctggctggggaagcgtggccaagcagccggccacgacg
aagtccctgctggagatccagagagaggaggcccagcaggtgaagcagaggaaggagcag
ggggctgggggccagcagcccagtcaccccacagtcacccagcagaaccgtgcccagaac
agagctaccaccgctctgagcccctcagtgtggggctcggtggccaccagcggcggggct
cctaactggggtggtgacagcagcatctggggcgacagcaccaactccaacatgggcttc
tgggaggaggaggtggcccaggccccaccccccgccaggaagcccaacgctcagaagaac
aacaagggcaacgccaacctcagcagtcgggccaataagaaggtggaggaggaggagaag
ctgctgaagttgttccagggggttaataagagacagcaggatggcttcatgcagtggtgt
gagaagaccctgcacaccctcaacaccgccaacaacctggacgtcccgacatttgcatcc
ttcctgaaggaggtggacagtccgtacgaggtgcacgactacgtgcgcgcctacctgggg
gacacgtccgaggccaaggagtttgccaaacagttcctggagcgccgtgccaagcagaat
gccaaccaacagaaagcgcccccggccccgcagaaccagcaaccaacactaaaacagcaa
cagcaggattcaatgtggggtgtaagcgggacaggctctccttctctgtaccagtcaaac
cacaccagcctccagcagcaggcacgcttcgagaccgtcacctcagggaagaagaagaaa
aagcagaagatggtccgggcagaccccagcctgctaggtttttctgtgaacgcggcgtct
gagaggttgaatatgggtgagatcgagacggtggaggacttttaa
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