Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376028
Help
Entry
139376028 CDS
T10872
Name
(RefSeq) integrin beta-1-like
KO
K05719
integrin beta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03271
Virion - Rotavirus
ocla04145
Phagosome
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
ocla04518
Integrin signaling
ocla04530
Tight junction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
ocla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
139376028
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139376028
04514 Cell adhesion molecule (CAM) interaction
139376028
04517 IgSF CAM signaling
139376028
04518 Integrin signaling
139376028
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139376028
09144 Cellular community - eukaryotes
04510 Focal adhesion
139376028
04530 Tight junction
139376028
09142 Cell motility
04820 Cytoskeleton in muscle cells
139376028
04810 Regulation of actin cytoskeleton
139376028
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139376028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139376028
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139376028
04515 Cell adhesion molecules [BR:
ocla04515
]
139376028
04090 CD molecules [BR:
ocla04090
]
139376028
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
139376028
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139376028
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139376028
CD molecules [BR:
ocla04090
]
Proteins
139376028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
139376028
NCBI-ProteinID:
XP_070974210
LinkDB
All DBs
Position
20:complement(18039242..18078395)
Genome browser
AA seq
802 aa
AA seq
DB search
MDLRLLSIATLLGILCFCSAQQEGSDCIKANAQSCGECIQVAEKCGWCTDTDFLKQGESK
SARCDELQSLITKGCTKAKIENPRGSTSINKNKAVTNRKKDMAEKLKADQITQIQPQKLT
LNLRSGEAQTFKLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMKEVTSDF
KIGFGSFVEKTVMPYISTTPARLLNPCTSTNNDTCTSPFSYKNVLKLTENGEEFNSLVSK
QQISGNLDSPEGGFDAIMQVAVCGNAIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPND
GKCHLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYKELKNLIPKSAVG
TLSSNSSNVIKLIIDSYNSLSSEVILENGKLPEGVSITYKSICKNGWVGTGENGRKCSNI
SIGDEVSFEIAIKSEKCPPQGKSETITIKPLGFTENVEIVLNFICECECSKDGKPLSEMC
HNGNGTFECGACRCNEGRIGRLCECSTDEVRTDDLDANCRKDNGTDICSNNGDCVCGTCE
CKKRENPEERYSGKFCECDNFNCDRSSNKLCGGHGRCECRVCVCDANYTGSACDCSLDTS
TCLAANKQICNGRGTCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKDCVQCRAFETGEK
KDTCERDCSYFNLIRVKDRDKLPQPADQSYPLSHCKERDANDCWFYYTYAVRNHTESEVY
VVDTLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWD
TGVNPIYKSAVTTVFNPKYEGK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaggctactttcaatagcaacattattaggaatcttatgtttctgcagtgca
cagcaagagggcagtgattgcatcaaggccaatgcacaatcatgtggggaatgcatccaa
gtggcagagaaatgtggatggtgtacagacacggacttcctgaagcagggagagtctaag
tcagcacgctgtgatgagctacagtccctgatcacgaagggctgcactaaggccaagatt
gagaacccccggggcagcacctccatcaacaagaacaaggctgtcaccaaccgcaagaag
gacatggcagagaagctgaaggctgaccagatcactcagatccagcctcagaaactcacc
ctcaacctccgatccggtgaggcccagacctttaagttgaagttcaagagggcagaggac
taccccatcgacctctactacttgatggatctctccttctccatgaaagacgatttggag
aatgtcaagaatctggggactgacctgatgcgtgagatgaaggaggtcacctcagacttc
aagatcggtttcggctcctttgtggagaagacggtgatgccatacatcagcactacccca
gccagactgctgaacccctgcaccagcaccaacaacgacacctgcaccagccccttcagc
tataagaacgtgctgaagctgactgagaacggagaggagttcaacagcctggtcagtaag
cagcagatctctggaaacctggactcccctgagggaggattcgatgccatcatgcaggtg
gccgtctgtgggaatgccattggctggaggaacgtcacacgtctgctggtgttctccact
gatgctggcttccactttgctggagacggcaagctgggcggcatcgttctgcccaacgat
gggaagtgtcatctggagaacaacatgtacaccatgagccattactacgactatccctcc
attgcccatttggtccagaaactgagcgacaacaacattcagaccatttttgctgttact
gaggaattccagcctgtttacaaggaactgaagaacctcatccccaagtcagcagtagga
actctgtcctccaactccagcaacgtcatcaagctcattatcgattcttacaactctctg
tcatctgaagtcattctggaaaacggcaagctgcctgaaggtgtatccataacatacaag
tccatctgcaagaacggttgggttggaacaggagagaatggaagaaaatgctcgaacatc
tccattggagatgaggtgtcctttgagattgccatcaagtccgagaagtgtccgcctcaa
ggcaagtccgagaccattacaatcaagcccctgggttttactgagaatgtggagatcgtc
ctcaacttcatctgcgaatgtgaatgttccaaagatggaaaacctctcagcgagatgtgc
cacaatggcaacgggacctttgagtgtggagcctgcaggtgcaacgagggccgtattggc
agactgtgtgagtgcagtacagacgaggtgaggacggacgacctggacgctaactgtcgg
aaggacaacggtacagacatctgcagcaacaacggagactgtgtgtgtggaacctgtgag
tgtaaaaagagagaaaacccagaagaacgttacagtgggaagttctgcgagtgtgacaac
ttcaactgtgaccgctccagcaacaaactctgtggaggacatggacgttgtgagtgcagg
gtgtgtgtctgtgatgccaactacacgggcagcgcctgcgactgttccctggacacctcc
acctgcctggcagccaacaagcagatatgtaatggccggggcacctgcgagtgtggcgtc
tgcaagtgcaccaaccccaagttccagggtcccacctgtgagatctgccccacctgcccc
ggagtctgcgctgagcacaaggactgtgttcagtgccgggcctttgagacaggagagaag
aaggacacgtgtgagagggactgcagctacttcaacctgatcagagtgaaggaccgggac
aagctgccccagccagccgaccagtcctaccccctatcccactgtaaggagagggacgcc
aacgactgctggttctactacacctacgccgtcaggaaccacacagagagtgaggtctac
gtggtcgacactctggagtgcccagcgggtcctgacattatccccatcgtggctggcgtg
gtggcgggcatcgtgctgatcggcctggccctccttctcatctggaagctgctcatgatc
atccacgaccgcagggaatttgccaagttcgagaaggagaaaatgaacgcgaagtgggac
acgggagtgaatcccatctacaagagtgccgtaacaactgttttcaatccaaaatacgag
ggcaaatga
DBGET
integrated database retrieval system
