Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376053
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Entry
139376053 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63-like isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139376053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139376053
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139376053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
DUF5799
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
139376053
NCBI-ProteinID:
XP_070974289
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Position
20:complement(19933006..19939482)
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AA seq
490 aa
AA seq
DB search
MNKSLGYSHSTKQDSNMDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCAQDIFQASNP
YLSTRGTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQEQESSSSKPEP
EPAKCDQPMCEEHEGEKINIYCVTCGVPTCSLCKVFGAHKDCDVAPLNTVFNKQKTELTD
CIAMLVGNNDRIQGIMSQLDETCKTVEENGRRQKSKVCESFDHLYAVLEERKGDMTLKIN
AEQQEKLDYINSLMRKYREHLENMAKIVETGIQTMEESEMATFLQTAKPLLQKLIAGTNI
SHLDKVERGYDNMDHYTANFERERRVLLTIDFVKDVEDDEEFEDGEEEVELRRMTGATRT
DVSPSAAGPSVVKANPPQPQQQTAPPPLPQRPIETLGVMATLANPQGPVRATTPVQFPSL
TPTPTATAQASPVHFPTTTPVQFPNTNLVNFPSAEPPTQMTSDAASSQQNTDDKDGPKHV
FSFSWLNNQK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatctctggggtattcacattccacaaagcaagacagcaacatggacagcttg
gagaaacagcttatttgccccatctgtttggagatgtttaccaaaccggtggtgattctc
ccttgtcaacacaacctttgtcgaaaatgtgcccaagatattttccaggcctcaaaccct
tatctatcgaccagaggaaccacggtatcttcagggggacgtttccgctgcccgtcctgc
agacatgaggtggtcctggacagacatggagtctatggcctgcagaggaacctgctggtg
gagaatatcattgacatgtacaaacaagaacaggagtcctcaagcagcaagcctgagcct
gagcctgccaagtgtgaccagcccatgtgtgaggagcatgagggtgagaagatcaacatc
tactgtgtgacgtgtggtgtgcccacctgctctctctgcaaggtgttcggagcccacaaa
gactgtgatgtggccccactcaacactgtattcaataagcaaaagactgagttgactgac
tgtatagccatgctagtggggaacaacgacaggattcaaggcatcatgagtcaactggat
gagacctgtaagacagttgaggagaatggccggaggcagaaatccaaagtgtgtgaaagt
ttcgatcacctttatgccgtcctggaggagcggaaaggagacatgaccctgaagatcaac
gcagagcaacaggagaaactggactatataaacagcctcatgaggaagtatagagagcac
ctggagaacatggcaaagattgtggagacagggatacagacaatggaggagtcagagatg
gctactttcctgcagactgcaaagcctcttctacaaaagctcattgcaggcactaacatc
tcccacctggacaaagtggagcgtggctatgacaacatggatcactacacagctaacttt
gagcgggagaggagggtactgctcactatagactttgtgaaagatgttgaagacgatgaa
gaatttgaagatggagaagaggaagtagaattgaggcggatgacaggggcgacccgtaca
gatgtctccccctctgctgcagggccctctgtcgttaaggccaaccctccacagccccag
cagcagacagcacccccaccacttcctcagagacctattgagaccctaggtgtcatggct
accctggccaacccacagggccccgtccgtgccacaaccccagtacaattcccatcccta
accccaacaccaactgccaccgcacaggccagcccagtccacttcccaaccacaacccct
gttcagttcccaaacacaaatctggttaacttcccatcagcagagccaccgacacagatg
acttctgatgcggcatcaagtcagcaaaacacagatgacaaagatggacccaaacacgtc
ttctccttttcttggctgaacaaccagaagtag
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