Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376060
Help
Entry
139376060 CDS
T10872
Name
(RefSeq) laminin subunit gamma-2
KO
K06246
laminin, gamma 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139376060
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139376060
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139376060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_B
EGF_laminin
EGF_LMN_ATRN
TACC_C
CAP_N-CM
RPN11_C
Motif
Other DBs
NCBI-GeneID:
139376060
NCBI-ProteinID:
XP_070974306
LinkDB
All DBs
Position
20:complement(20101972..20117775)
Genome browser
AA seq
1150 aa
AA seq
DB search
MRILIYLIPVRFSVTMMSSWIFLCGLSLCTWSSIQGTYRYGGSDICKCNGKSRYCLPDSG
GLHCVDCQDNTEGRHCERCKEGFHHQRAGDSCVPCNCSSIGSVGAHCDSRGRCSCRAGTQ
GDKCDRCQNGTPISSNGCAANGGQLTDNSVTAQSLPCFCYGHSTECSTAKGYSVHTVTST
FDDGPEGWRAATVHGVTPSQVHFRWSPTHHDIEVISKDILPVYLYAPDSYLGNQELSYGQ
NLSFSLRLDRGIRHPSMADVVLEGSGLSVAASLGDLRTIVPSGQKITYTFRLDEQQGSEW
RPHLSSFQFQTLLHNLTDIKIRGTFGENGRGYLDDVRMESARRGAGSPAAWVQKCSCPVG
YEGQFCEKCAAGYKRSLPSKGPYSSCEPCSCRGGSCDSETGDCYSADETPGRQICPPGYY
NDPAQPQSCQKCPCPNGGACSVSPGSLEVKCDLCLPGTTGSHCHTCQDGFYGDPLGEDGI
QRPCRRCQCNGHMDPNTVRSCDPQTGQCLKCLKHTTGFFCESCLEGYHHSMPSEACKPCG
CNSQGSLYNKCSDQGQCSCREGFEGLKCQRSACPSCFNLVKTEMEGYSRKLREIETLFTG
MESGSLPVNDAQMEKAIRTAEDIVTDLQRNAQTLSESEKDLQARLSDISATQLSEGRDIQ
AISNTVDNIKLQDQKYQRQVSDVQTLISDVRRKLEEARFNIKKAEFPLGDAGVGTDTFSS
LVQRATDLAEKQQSKSETMEKTANGALAKSEKSLALMRSVMTGENKIKELISDLKTKYDE
NSAQVKAMESLATRLSSSARDESRMATDTLEQIASLEPGIPRPLKKDIDSVLAKLDGLRE
RVEKNLTAYQALQEDTQEDKAAVEDLLAQGKAAQQKYDQLLGRANHAKADTELALKDITD
NIDGVDNVLEMLRGFDGQINKNKALADEAIKKLPGINATIHQAVGNNSETLFIIGSVSGD
YNDALGTVSSLEAVVSRLEGMSGSLPVPPAGLLKDATKLKEDMQGLQKQAVATVAKVAAE
KANAEIQKDRAAEASIGATGAYNNAKHTRDAVGETLLVINNLLSMIGKPGSVDEERLGEL
EQSINSARGQVNLQLQPRLQDLEGKEASQRTRLTGLNLDIDMILDDIRNLEDIHANIPKG
CFNSPPIERP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttgatctacttaattcccgttcgattttctgtgacaatgatgagcagttgg
atatttctgtgtggactttctctttgtacctggtcgtctatccaaggaacctacagatat
ggaggatcagacatctgtaaatgcaatggaaagtcacgttattgcttgcctgactctggg
ggcctccattgtgtggactgccaagacaacactgagggaaggcattgtgagaggtgcaag
gagggattccaccaccagagggcaggagacagttgtgtgccgtgtaactgcagctctata
ggttctgtaggcgcacactgtgacagtagaggacgctgcagctgtagagcgggaacacag
ggggacaaatgtgaccggtgtcagaatggaacacctatcagctcaaatggctgtgctgct
aatggtggccagctcactgacaactcagtgacagctcaatctctaccttgcttttgctat
ggacactcgactgagtgctccacagccaagggatactccgttcacacggtcacctcaacc
tttgacgatgggccagaggggtggcgagctgccactgttcacggtgtgaccccgtctcaa
gtccacttccgctggtcccccactcatcatgacattgaggtcatctccaaagacatcctg
cctgtttacctctatgcccctgactcttacctgggcaaccaggagctgagctacggtcag
aacctgtccttctccctgaggctggatcgagggattcgccatccgtccatggctgatgtg
gtgctggagggatctgggctgagcgtggcagcttccctgggagacctgaggaccatcgtt
cccagtggacagaagattacttacacattcagactggatgagcaacagggcagtgaatgg
aggccccacctttcatctttccagtttcaaacactcctccacaatctgactgacattaaa
atccgtgggacatttggagaaaatgggcgtggttaccttgacgacgtgcgcatggagtct
gcccgtcgaggtgccgggtccccagctgcatgggtacagaaatgtagctgcccagtggga
tatgagggccagttctgtgagaagtgtgctgcagggtataaaagaagtttgccaagcaaa
ggtccatacagctcctgtgagccctgcagctgtagaggaggaagctgtgactctgaaaca
ggagactgttactctgcagatgagacccctggtcgccagatctgcccgccagggtactat
aatgatcctgcccagccacagtcttgtcagaagtgtccctgtcccaatggaggtgcctgc
tctgtgagcccagggtccctggaggtcaagtgtgacctctgtctacctggcaccactggc
tcacattgccacacctgccaggatggtttctatggcgatcccttgggtgaagatggcatc
cagaggccttgtcggcgctgccagtgcaacggacacatggacccgaacactgtccgtagt
tgtgacccacagacagggcagtgcctgaaatgcctaaagcataccactggcttcttctgt
gagagctgtctggagggctatcaccacagcatgccatcagaggcatgcaaaccttgtggc
tgcaattctcagggctctctgtacaacaaatgcagtgaccagggccagtgttcttgcaga
gaaggctttgagggtctgaagtgccagcgttccgcgtgtccctcctgcttcaaccttgtc
aagactgagatggaggggtatagtcgtaaactacgggagatagaaactctgtttacgggc
atggagagtggcagtctaccagttaacgatgcccagatggagaaagccatcagaacagca
gaggacatagtcacagacctgcagagaaatgcacagacactctctgaatcagagaaagac
ttacaggcccggctctcagacatcagtgcaacccagctgagtgaaggcagagacatccag
gcgatctctaacaccgttgacaacatcaagctgcaggaccagaagtaccaacgacaggta
tctgatgtccagacactcatcagtgatgtgcggcgcaaacttgaagaggcaagattcaac
atcaaaaaagctgaattccccttaggtgatgcaggggtgggcacggacaccttctcttct
ctggttcagagagcaacagacctggctgaaaaacagcagagcaaatcggagacaatggag
aagacagctaacggtgcccttgcaaagtcagagaagtccctggcactcatgagatcggtc
atgacaggggaaaacaagatcaaggagcttatcagtgatcttaaaaccaagtatgatgag
aactcagcccaggttaaggccatggagagcctggctactcgcctgagcagctctgcccga
gatgagagcaggatggcaactgacactctggagcagatagcctccctggagccaggaatc
cctcgtcctctcaagaaggacattgacagtgtgttggctaaattggatggcctgagagaa
cgggtggagaagaacctaacagcgtaccaggcactgcaagaggacacccaggaggacaaa
gccgcagtagaggatcttctggcccaggggaaggcagctcaacagaaatatgaccagctt
cttggcagagcaaatcatgcgaaggctgacacagaactggccctgaaggatatcacagat
aatattgatggggtggataatgtactggagatgctaagagggtttgatggccagatcaac
aagaacaaggcattggctgacgaggccataaagaaactccctggcatcaacgccaccatt
catcaagctgttggcaacaactcagagaccctattcatcataggcagtgtgtctggagac
tacaatgatgcactgggcactgtcagcagcctggaagctgtggtctctcgactggaggga
atgtccggctctttaccagttcctcctgctggtctgttgaaggacgccaccaagctgaaa
gaggacatgcagggtctgcagaagcaggcagtggccactgtggccaaagtggccgcagag
aaggctaatgctgagatacagaaagacagagcagcagaggcttcaattggagcaactggt
gcttacaacaatgccaagcacaccagagacgctgtgggagaaacactcctggtcatcaat
aaccttctgagcatgatcggtaaacctggcagtgtggacgaggagaggctaggggagttg
gagcagtccatcaacagcgctcgtggccaggtcaacctacagctccagcctcgactgcag
gacctagaagggaaggaggccagccagaggaccaggttgactggcctcaacctagatatc
gatatgatcctggacgacatcaggaacttagaggacatacacgcgaacatccctaagggc
tgcttcaactccccacctattgagagaccttaa
DBGET
integrated database retrieval system
