Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376066
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Entry
139376066 CDS
T10872
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139376066
mRNA cycle factors
Common to processing body (P body) and stress granule
139376066
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139376066
NCBI-ProteinID:
XP_070974319
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Position
20:complement(20055518..20086224)
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AA seq
1181 aa
AA seq
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MNLCAQYLRQAEALKADMTDFKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQTNTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALAKAVESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLILQKAFSSQQLVHITIIN
MFELHHLRDFGNETDDQSFSSEEQIGWFQLLGLFMSFLGVMCSRALLNKNRGEEIMGECP
LPAIKVSLDWLKLRPTVFQDGAVDRRQYVWPWLVSILNSFQPKEEDVSCASMTPLPEEFE
LQGFLALRPALRTLDFTKGHQGVAVDKEGLPVRARHQRLISLGKWVADNQPGLIQYKVSD
GLLLFITDIEELAIEEPQEKDAPVLQESSNSEQTPNEGNMGLKSVLSMGKTQNSVLEIGE
RPVVTFKENIKPREQSREPSRNHHQKEAGKERRDFGKGNGVPGKGEQKRDGKRKSEVKKN
SHEKAADAGKQVKAQSDMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRQGF
PPPAYVIPPPVAFSMNPGFTFSTGMSVPGPFLQSASHPQQPGAQQQVQVQTGKPSHIPYS
QQRPSVPGAMNQGAPQGQPQQQPSQTMQQVQLQVQALVQQQQSPTKPVQPVQLGKSPPHH
PGMQQYMQVDQAGQMWGQQHQTQPTMQKMQAMQMPVKQPYYMGSPQDPLKLFEQQQYAMQ
TVPQPNSMDKKMKYPDVKMQDFYWDPSYRMGDNRPMVGERMGKRLPPGAFHPDQDNTPRG
PPFEDKSSPLLPPDLLKSISDFEEEEELAFTKPHGFYQALAGPLSTAPGRNIFLPSQSRM
ESGSEVMGQSSSLMPLSGFPIQESSYQNNSIFSQAYGKNMAPNPKPDTPMLHQEPSLYSL
FEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGSIPFSNFGPIGTPDNRDR
RMVDRWKVEKTPVSGFGLDYLPSASSSSDHRTPENSWHQGNTPSSSWAAQELPMEDSSTV
LLDSLKSIWSSSMMQPGPSALEQLLMQQKQQRGRGTMNPPH
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttacggcaggcagaggccctgaaggctgacatgacagat
tttaagcttggtgcagcagaggtctggacttcaaggcaagcgcttcaggacttgtaccag
aagatgctggtgactgatctggagtatgctttggacaagaaagtggagcaagatctctgg
aaccatgcttttaaaaatcaaataacaacactacagagtcaagccaagaaccgagccaac
cccaatagaagtgaggtgcaggccaatctgtccctatttctcgaagcagctagtggattc
tacacacaattactacaggagctgtgtaccgtgttcaacgtggacttgccttgccgtgtg
aagtcatctcagcttggaattatcagcaataaacagaccaacaccagcgccattgtaaaa
ccccaacccagctcttgctcttatatctgccagcattgtctcgtccacctcggagacatc
gcacgatatcgcaaccaaaccagccaagcggagtcctattacagacacgcagctcaactt
gtcccttcaaatggtcagccttacaatcagctggccatcctggcctcctctaaaggggac
cacctcacaacgatattctactactgcaggagcattgccgtcaagttccctttccctgca
gcctccaccaacctgcagaaagctctcgctaaagctgttgaaagccgcgatgaggtcaaa
acaaagtggagtgtgtcagatttcatcaaggccttcatcaagttccatggtcacgtttac
ctgagcaagagcctggagaagcttaacaacctgagagaaaagctggaagaacagtttcag
cggctgattctgcagaaagccttcagctcccagcagctggtccacataacaattatcaac
atgtttgagctgcaccatctgagggacttcggcaatgaaacagacgaccagagcttcagc
tccgaggagcaaatcggctggttccaacttctcggtctcttcatgtcatttcttggtgtc
atgtgtagccgagcactgctgaacaagaaccgaggagaggagatcatgggagaatgtcca
ttgccagccatcaaggtgtccctggactggctcaaactacgacctaccgtttttcaggac
ggtgccgtggacagacgacagtatgtttggccttggctggtgtccattctgaacagtttc
caaccaaaggaagaggatgtttcctgtgcatcaatgactccacttccagaggagtttgaa
ctgcaggggtttttggctctcaggccagcgctacggacccttgacttcactaaaggccac
cagggtgttgctgtggacaaggagggtctgccagtccgtgcccgtcatcagaggctcatc
agcctggggaaatgggtggcagacaaccagccagggctgattcagtacaaagtcagcgac
ggcctgctgttgttcatcaccgacatcgaggaattggccatcgaggagccccaggagaag
gatgcccctgtgctccaggagtcctccaacagtgagcagacccccaacgagggcaacatg
ggcctgaagtcagtcctgtccatgggcaagacccagaacagcgtgttggagatcggcgag
aggcccgtggtgaccttcaaggagaacatcaagccccgggagcagagcagagagcccagc
cgcaatcaccaccagaaggaggcagggaaggaacggagggacttcggcaaaggcaacggg
gtgccgggaaaaggagagcagaagagggatggcaagaggaagagtgaggtgaagaagaac
agccatgagaaagctgcagacgcagggaaacaggtgaaagcccagtcggatatgaggaag
acgccagtgtctgaggccaggaagactccagtcactcagacccagactacctgctcctcc
cagttcatccccatccaccacccgggagccttccctccactgcccagccgacaaggtttc
ccccctccggcctatgtgatccctcctcctgtggcgttctccatgaatccgggctttacc
ttctctacgggcatgtctgtccccgggccgttcctgcagtcggcctcccaccctcagcag
cccggtgcccagcagcaggtgcaggttcagactgggaagccgtcgcacattccatacagc
cagcagaggccgtcagtgccaggggcgatgaaccaaggggccccccagggccagccccag
caacagccttctcagaccatgcagcaggtgcagctccaggtccaggctcttgtccaacag
cagcagtcacccaccaagcctgtgcagccagtacagctgggcaaaagcccacctcaccat
ccagggatgcagcagtacatgcaggtagatcaggctggacagatgtggggccagcagcac
cagacccagcccaccatgcagaagatgcaggccatgcagatgcctgtcaagcagccctac
tacatgggaagcccccaggaccccctcaagctctttgagcaacagcagtacgccatgcag
acggtgccccagccgaacagcatggacaagaagatgaagtacccggatgttaaaatgcag
gatttttactgggacccttcctaccgtatgggggataacagaccgatggtgggggagagg
atgggcaagcggctgccccccggggccttccacccagaccaggacaacacacccagaggg
cctccttttgaggacaagagctcccctcttctgcctccagacctgttaaaaagtatatca
gattttgaggaggaggaagagctggcctttactaagcctcatggtttctaccaggccttg
gctggccctcttagtactgctccaggacgaaatatatttttgccaagtcagtcaagaatg
gaaagtggctctgaggtgatgggccagtcatcttctctcatgcccttatctgggttccca
attcaggagagttcctatcaaaacaacagcattttcagccaggcctatgggaagaacatg
gctcccaaccccaagcccgacactcccatgcttcaccaggaaccttctctctactccctg
tttgaaggaactccatggtccccatcccttcctgccagctcagaccactctacaccagca
agccagtccccccattcttccaacccaagcagtttaccttcttctccacccacgcacaac
catggctccatccccttctctaacttcggccccataggaacacccgacaaccgagacagg
aggatggtcgaccgctggaaggtggaaaagacgcctgtgagtgggtttggtctggactac
ctgccctctgcgtcgtcgtcttcagaccaccgaacccctgagaacagctggcaccagggg
aacacccccagcagctcctgggccgcccaggagttgccaatggaagactcctccactgtg
ctcctggacagtctgaagtccatctggtctagctccatgatgcagccggggccttcggcc
ctggagcagctcctcatgcagcagaagcagcagaggggccggggcaccatgaaccctcca
cactga
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