Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376075
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Entry
139376075 CDS
T10872
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139376075
04518 Integrin signaling
139376075
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139376075
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139376075
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139376075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
EGF_Tenascin
Pur_ac_phosph_N
EGF_2
Fn3_Dep-1_2nd
Interfer-bind
FN3_Tor_3rd
Fn3_Dep-1_1st
DUF4998
Big_10
DUF7949
Motif
Other DBs
NCBI-GeneID:
139376075
NCBI-ProteinID:
XP_070974335
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All DBs
Position
20:21006874..21160817
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AA seq
1274 aa
AA seq
DB search
MSPVRGWLLGQVLLLLGTQAALSPSGEEGKLVRTIRVRRQAPSDGPTSQSNNQTIKEQPM
VFNHVYNINVPLESLCSVDLDSAVPLPSQATRGAVSSGGGEGATEFTEQTVDADSQVTFT
HRINIPKQACACPTANIVQQLAIRIEMLEREVLLLRAQCSSGNCGCGESSATGHLDFIPQ
CSGHGSFKMDLCGCVCEDGWTGKNCSEPHCPDNCSGQGVCMEGECVCDRDFGGDNCSEPR
CPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQCRPGYVGEDCSL
AYCANNCSQKGICKEGFCVCQDGFAGEDCSAVAPALNLRMRGVTEHTIDLEWERSVLMTD
YLVTYVATSPGGVQLEIRIPGNTTTCSIPDLEPGIEYNINVYAVLNNVISAPTNTQVSTY
LSNPDGLLFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGL
RPGEEYTVNLVALRDQGRSQPVSATVTTLIDGPTQLIVRDVSDSVAFVEWTNPKAKMDQI
VLRYGLVGGDSPKTTFRLQPTLSQYSLQMLRPGSRYEVSISGVRKGNESGTISTEFSTEI
DAPKNLRVLSKFSTTLELEWDNSEAEVEGYQVVYSTLAGDQYKKVIVPLNDGPTSKTTLT
NLLPGTEYGIGISAMLGTNQSFPATMNARTGLDVPMDLTVTASTDNTITLLWGVVQGPID
HYMVTYTSSSGLTTEVTIPKDVTTTTLNDLEPGTEYTITVAAQRGRQQSTAATIDGFTGM
DPPKEMTVSYATEDSVIISWLRPFAPFDYYKMSYQSARGTVDSVVIDNDVTNYTLSSLHP
ATEYEINLNVVRGSQESKSITTSVFTAMDMPMELTALNITPQGALLRWNPPLSSVDNYVF
TLTCYQVTANTFLVEGVKQEHQLSKLKPSTTYSVALYATKGPLTSGTVIANFETPMDAPL
NLTASEVNHRSALISWQPPIADIDNYMLTYKSVDGNRKELILDAEDTWIRLEGLADTTEY
TVRLQAARGLETSGIVSTAFTTGNRLFATPQNCAQHLLNGESLNGVYTIYINRDANQGVQ
VYCDMTTDEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKLSAQGRYE
LRIDMKDGQESVYASYDKFAIGDVRNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDI
AVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSVPFVEMKMRPFNY
RSISGKRRRSTPPE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgagccctgtacgaggctggctgctgggccaggttctactccttctggggacccaggct
gctctatccccgtccggtgaggaggggaagctggtccggaccatcagggtcagacgacag
gcaccttcagatggccccaccagccaatctaacaaccagaccatcaaggagcagccaatg
gtcttcaaccatgtgtacaacatcaacgtgcccctagagtctctgtgctcagtggatctg
gactcagcagtgcctctacctagccaggccaccagaggggctgtgtccagtgggggtggg
gagggcgccacggagttcacagagcagacagtggacgcagacagccaggtcaccttcacc
caccgcatcaacatccccaaacaggcctgcgcctgtcctacagccaacatcgtgcagcag
ctggccatccgcatcgagatgctggagagagaggtgttgcttctgagagcccagtgcagc
tctggcaactgtggctgtggggagagttcagccacgggtcacctggactttattccccag
tgcagtggccatggcagcttcaaaatggacctgtgtggctgtgtgtgtgaggacggctgg
acgggcaagaactgctctgagccgcactgcccagacaactgctccggacagggagtgtgt
atggagggtgagtgtgtgtgtgaccgtgacttcgggggggacaactgctcagagccccgc
tgcccggcggactgctccggtcgagggctgtgcatggatggggagtgtatctgtgaggag
aacttcactggagaggactgtacactgggtcgctgcctcaatgactgttctgaccagggg
ctgtgcaccaacggaacctgccagtgtcgcccgggatacgtaggagaagactgctccttg
gcctactgcgccaacaactgtagtcagaagggcatttgtaaagaaggcttctgtgtctgc
caagatggcttcgctggagaagactgctctgcagtggctccggctctgaacctgcgcatg
cggggagtgacggagcataccattgacctggagtgggagaggtcagtgttgatgacggac
tacctggtcacctacgtggccaccagcccaggtggggtccagctggagatcaggatccct
gggaacaccaccacctgcagtatcccagacctggagcctggcatcgagtacaacatcaac
gtctacgctgtgctcaacaacgtcatcagtgcccctaccaacactcaggtgtcaacctat
ctctcaaatccagacggtttactcttcaaatccatcacagagacgtcagtggaggtgcag
tggcaacctttctactactcctttgatggctgggaaataagcttcattcccaaggacaat
gatggagggatgacagcccagctacccagcaccatcacttcgttccaccagacaggcctg
aggccaggggaggagtacaccgtcaacctggtagctctaagggaccaaggccgcagccag
cctgtatccgccaccgtcaccacattgattgatgggccgacacagctgatagtgcgtgat
gtctcggactcggtggccttcgtggagtggaccaatcccaaggccaagatggaccagata
gtgctgcgttatggcctggtaggaggggacagtcccaagactactttccgtctgcagccc
accctcagccagtactccctgcagatgctgaggccaggctcgcgctatgaggtgtccatc
agtggtgttcgcaagggcaatgagagtggaacaatctccacagaattcagcaccgagatc
gacgcgcccaagaacttgcgagtgctgtccaagttctccaccaccctggagctggagtgg
gacaacagcgaggcggaggtagaggggtaccaggtggtctacagcaccctagcaggggac
caatacaaaaaagtcattgtcccactcaacgatggacccaccagcaagaccacactcaca
aacttgttgccaggtacagagtatggcattggcatatcggctatgcttggcaccaaccag
agttttcctgccacaatgaacgccagaactggtctagatgtccccatggacctaactgtg
acagcgtccacagacaacaccatcaccctgctgtggggggtggtccaggggcctatcgac
cactacatggtcacctacacctcctcatctggcctgaccacggaggtgaccatccccaag
gacgtgaccaccaccacgctcaatgacctggagccaggcacagaatacaccatcactgta
gctgcccagaggggaaggcagcaaagcactgcagccaccatcgatggcttcacaggaatg
gatccacctaaagagatgactgtgtcatatgccactgaagactccgtcatcatatcatgg
ttgagaccatttgctccctttgactactacaagatgtcctatcaatcagcaagagggaca
gtggacagcgtggtaattgacaatgacgtcactaactacaccctgtccagcctccaccca
gcaacagagtatgagatcaacctgaacgttgtgcgaggcagccaggagagcaagtccatc
accaccagtgtcttcacagcgatggacatgccaatggaactaacagccctcaacattacc
ccacaaggagctttactccggtggaaccctcctctgtccagtgttgacaactacgtgttc
accctcacctgctaccaggtgacagctaataccttcctggtggaaggtgtgaaacaggag
caccagcttagtaaactcaagcccagcaccacttactctgtagccctctacgccaccaag
ggacccttgaccagtggaactgtcatcgccaactttgaaacacccatggacgctcctctg
aacctgacggctagcgaggtgaaccaccgcagtgccctcatctcctggcaaccgcccatc
gcagacatcgacaactacatgctcacatacaagtcagtggacggcaacagaaaggagctg
atcctggatgccgaggacacttggatccgtctggaggggctggcagataccacagaatac
actgtgaggttgcaggctgccaggggattagagaccagcggaatcgtctctacggccttc
acaacaggaaaccgtctgtttgccaccccccagaactgtgcccagcatctgttgaacggg
gagtccctcaatggcgtctacaccatctacatcaacagagacgccaatcagggagtgcag
gtctactgtgatatgaccacagatgaaggaggctggatcgttttccaacgtcgtcagaac
ggcctgacagacttctccaggaagtggagtgactacagggtcggctttggaaacctggag
gatgaattctggctcggtttggacaacatacagaagctctcagctcaaggtcgctatgag
ctccggatcgacatgaaggatggccaggagtctgtctatgccagctatgacaagttcgcc
attggagacgtcaggaatctgtacaaactcaggataggagagtacaatggcacagctggg
gactcgctgagctatcaccaaggccgtcccttctccaccaaggacagagacaatgacatc
gccgtgaccaactgtgctctgtcctacaaaggagcctggtggtacaaaaattgccatcgg
gccaacctgaacgggaaatacggcgagtcgagacacagtcagggtatcaactggtaccac
tggaagggccatgagttctctgtcccctttgtggagatgaaaatgaggccgttcaactac
cgcagcatcagtggcaagcgaaggaggtccactcctccagaataa
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