Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376238
Help
Entry
139376238 CDS
T10872
Name
(RefSeq) coatomer subunit alpha-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139376238
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139376238
Membrane trafficking [BR:
ocla04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
139376238
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139376238
Exosomal proteins of bladder cancer cells
139376238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
139376238
NCBI-ProteinID:
XP_070974653
LinkDB
All DBs
Position
20:complement(32357350..32377341)
Genome browser
AA seq
1223 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVETE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFSSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCSIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERGCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDP
EKDTVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADMDVDAP
GGEGWGEDAELQLDEDGFMDAQDGLGEEGGATKEEGGGWEVEEDLDLPPELELPAGAGGG
AEDGFFVPPTKGMSPTQLWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVQFGPYKQLFMQ
TLSRGRTCYLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTAGR
FEEAVERFRTILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQ
KRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLKNFKTAASFARRLLELGPKPEVAQQT
RKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPPYKGQVC
RVTQVTEIGKDVIGLRVSPLQFR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagacgaagtcggcccgtgtgaaagggctgagtttccaccctaag
cggccctggatccttgctagtcttcacaatggagtcatccagctgtgggactatcgaatg
tgcacactgattgacaagttcgatgaacatgatggccctgtcagaggaattgatttccac
aagcagcagcctctttttgtgtctggaggtgatgactacaaaatcaaggtgtggaactac
aagctgaggcgttgcctcttcactcttcttggacacctggactacatccgcaccaccttc
ttccatcatgactatccctggattctgagtgcctcagatgaccagaccatccgcatctgg
aactggcagtccaggacatgcgtgtgtgtcctgacagggcataatcactatgtgatgtgt
gctcagttccacccatctgaggacctggtggtgtcggctagcctggaccagactgtgcgc
gtgtgggatatctctggtctgaggaagaagaacctctctcccagtgccgtggagactgag
gtgcgaggcatctctggcgtcgatttgttcggcgcttccgatgccgtcgtcaaacacgtg
ctcgagggtcacgaccgtggggtcaactgggccgccttccatcccagcatgcctctcatc
gtctcaggggctgacgaccggcaggtcaagatctggaggatgaacgagtccaaggcatgg
gagctggacacctgcaggggccactacaacaacgtgtcctgtgctgtcttccacccccgc
caggagctcatcctttccaactccgaggacaagagcatccgtgtgtgggacatgtccaag
aggactggcgtccagaccttccgcagggaccacgaccgcttctgggtgctgggcgctcac
cccaacctcaacctatttgctgccggtcatgacagtggtatgctggtttttaagctggag
cgtgagcgtccggcctacgctgtgtacggaaacatgctctactacgtcaaggaccgcttc
ctgcgacagctcgacttcagcagcagcaaggacactgccgtcatgcagctccgcagtggg
tcaaagttcccagtgttcagcatgtcttacaaccccgcagagaatgctgtcctgctctgc
actagggcaactaacctggagaacagcacctatgacttgtactccatccccaaagagagc
gactctcagaatccagatgctcctgaggggaaaaggtcctctggtctgaccgcagtctgg
gtcgccaggaaccgattcgctgttctggaccgcatgcactcgctgctgatcaagaacctg
aagaatgagattgtgaagaaggtacaggtacctagctgcgaggagatcttctatgccggg
acgggctccctgctgctgcgcgacgcagacggagtcaccctctttgacgtgcagcagaaa
cgctcgctggccaccgtgaagatcgccaaggtcaagtatgtggtctggagcgccgacacc
agccacgtggccctgctggctaaacacgccattatgatctgcaacaggaagctggagagt
ctttgcagcatccatgagaacatccgtgtgaagagtggagcctgggacgagagtggagtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcatggtatc
atccggactctggatctgcccatctacgtgacccgggtcagaggcaacagtgtctattgt
cttgaccgtgagtgcaggccccgcgtactgaacattgaccccacggagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgaggaggtgctgcacatggtgcgtaacgccaagctg
gttggccagtccatcatcgcctacctgcagaagaagggctatccggaggtggccctgcac
ttcgtcaaggatgaaaagacccgcttcagtctggctttggagtgtggaaacattgaggtg
gcgttggaggctgccaaggctctggatgagaggggctgctgggagcggctgggcgaggcg
gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccaaaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctacgcaagatgatg
aagatagctgagatcagaaaggacatgagtggacactaccagggtgctctgtatctgggg
gacgtcagcgagagagtccgcatcctgaagaactgtggccagaagtcactggcatatctg
actgctgccacccacgggatggacgaagaagcagaagccctgaaagagacctttgaccca
gaaaaggacactgtccctgaggtggaccccaatgcccagctgctgcagccgccacctccc
atcaaccccctggataccaactggcccctgctcactgtgtccaagggcttctttgaggga
gccattgcagccaaggggaaggctggtcagatggctgcagacatggatgttgatgcccca
ggaggagagggctggggagaggacgcagagcttcagctggatgaggatggtttcatggat
gcccaggatggattaggggaggaaggaggtgccacgaaggaggaaggaggaggctgggag
gtagaggaggatctggacctgcctccagagctggagttgccagctggtgccggaggaggt
gctgaagatggtttctttgtccctcctaccaagggcatgagccccacccagctgtggtgc
aacaactcccagctccctgtggaccacgtcctggctggttcctttgagaccgccatgagg
ttgctccatgaccaggttggggtggtgcagttcgggccctataagcagctgttcatgcag
actctatcccgcgggaggacatgctacctgggcctgccgtctctgccctgcctgcgtggt
aacccgcagaggaactggaaagactgtggggccaagcaggggctgcccgctgtgggtctt
cgtctctcagatctcattgcccgcctgcagcagtgctaccagctcaccactgccggccgc
ttcgaggaggccgttgaacgcttccgcaccatcctgctgtctgtgccactgctggtggtc
gacaacaagcaggagatcgcagaggctcagcagctgatcacaatctgcagagaatacatt
gttggcctcaccatggaaacggaaaggaaaaagttgcctaaagacacattggaccagcag
aagaggctgtgtgagatggcagcttacttcacccactgcagtctccagccagtccacatg
gtccttgtcttacgtacagcactaaatctattctttaaactgaagaacttcaaaacagct
gccagttttgcccgtcgtctgcttgaactaggacccaaaccagaggtggcacagcagaca
cgcaagatcttggcagcatgcgagaagacgctaaccgatgcccaccagctgaactacgac
ccccacaatccatttgacctgtgcgctgcctcgtacacgcccctgtaccgtggacgccca
gtggagaagtgccccctctctggggcctgctattgccccccctacaagggccaggtctgc
agggtcacacaggtgactgagatcggaaaggatgtgattggtctgcgtgtcagccctctg
cagtttcgttag
DBGET
integrated database retrieval system
