Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376254
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Entry
139376254 CDS
T10872
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8-like
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
139376254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139376254
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139376254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
RcpB
Chromo_MIT1
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
139376254
NCBI-ProteinID:
XP_070974697
LinkDB
All DBs
Position
20:complement(32682340..32711462)
Genome browser
AA seq
2570 aa
AA seq
DB search
MADPIMDLFDDTPLFNMDALPGDAFTQGSSDPVEEALKLALGQIDPPYEPTPALCTPVAA
PIIPDPVPVQQQASVPFALPQTVSIASTVPQTTLSVASNTSRAATVLLGSPLTVNSSAGT
TQQITTQQFTTQQLTQIAQQLTPQQLAAITQQAGGQGGSKIVILKGPGGHAQVLQTVPGT
GSQAGKVTFARVLSGTQLRPGMQILSGGTVLNQASPGQGPVKVGTGIQRLVQSPNGPLKQ
VQLISMPQGQTQTVQMQIPQAQLAQSQQIQLQPQTQVQLQSTMQTQVTATATGTTSVRPQ
GVTLTTVPQQGEAKRITLVLQQPHGGTTQGGAVTVGGSGQLQQGQQQRLVLGNLPGKLVL
QGGQLAALTQARAGQTGAQPKVLTIQLQVQQQPNQQGGPKFQLVSGGQGSSPQVVQISQG
QGGQRLAMPLKLLLQPQMSSTSTAGGTVSVVKVINTSAAGSAPSTTTTMASTGIRLAKAQ
EPVRRVETLGKQEKANRIVAEAIARAKARGERNIPRVLNQDELPPGQKAADKGAAATTTG
TPGAKKKGGGGGSKKKSPPGAGGKGMACAEKKGKAKAAGGAAVGTPVGVAGTSGSKNKSK
AKINTITLVGGKKRKRNASSDHSDGDLSPASPSKALEEDMLAKRRSNRQVKRKKYTEDLD
IKITDDEDEPEEDVDVTTTAAVASITGGAAGQLMGEQLKQELQLDGDGLSSMQFFVENPN
EEDAAIVDKVLSMRLTKKEVSPGHYINAEEFFVKYKNYSYMHCEWATLEQLERDKRIHQK
LKRFKIKHAQMRLLLQEEEEPFNPDYVEVDRILDESNSVDKDNGEPVVYYLVKWCSLPYE
DATWELREDVDEDKVVEFRKIQDRQPQLKRTPRPQAAAWKKLEEFREYKSGNVLREYQLE
GVNWLLFNWYNRQNCILADEMGLGKTIQSISLLSEVLGAGVQGPFLVIAPLSTITNWERE
FATWTDMNAIVYHGSLASRQMIQQYEMYCKDDKDHLIPGAYKFEALITTFEMILSDCPEL
REISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPA
QFSSESEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQ
KKYYRAILERNFSFLSMGATSNSNVPNLLNTMMELRKCCNHPYLITGAEESIVAELREVY
DPMVPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLY
ERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQND
LQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESNVNGQ
IQQFSKKEIEDLLRKGAYAAIMDEEDEGSKFCEEDIDQILQRRATTITIESEGKGSTFSK
ASFVATENRTDIALDDPEFWQKWAKRADIDFDSMNRKNTLVIDTPRVRKQTRQFATLRGE
GGEISDPDSDDEYPPANSRQSRSSRRSERHTGNGYGRTDCFRVEKHLLVYGWGRWRDILS
HARCKRRLGERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREPHTLLNHSGL
SIPVPRGRKGKRVKAQSSFDVQKVEWIRKYNPDSLLLDDSYRKHLKHQCNKVLLRVRMLY
YLRQEVIGEHADSVLRGADARDIDIWMPEMEQQEVPSGWWDTEADRSLLVGVFKHGYEMY
TTMRADDCLCFLERAGRPDDQAIDAEQHSADAELGDGGDDDKYSEDPEFKPASRHTKDLY
EEADSMNMGDDICVDDKPGPVKTKGPPSGLSGACEWPTSSSLTARLRRLITAYQRSYKRE
QLKVEAAEKGDRKRRRCEQASKLKEIARQERQQRWTRREECDFYRVVSTFGVERIKEPTA
QEGEDAKLEWARFRTFARLDKKTDESLSRYFRCFMAMCRRVCNLRPARGEDPSDLGQSMA
PITEERASRTLYRISLLRRLRERVLPHPSMEESLLLAPLSSELPVWWSTPAHDRELMLGA
ALHGVSRTELSVFSDPQFSFSQARHDYLEIQQNQPAPASPLRQPQAEEGSAVKEEEGLNR
ESGLLGASEALGHSDTQTTPLSRPDGKERDRTGLGWKKSRGRGPRSGGRKGGGSGEGGMS
DLDSDSDSGSSTSSRRSESSDDSVDSDAERERAALKMEEDGENSLLSMTLSQDGVPPESL
TDPFRVDWPKDRVLINRLDSLCTLVLSGQWPTGRRYASDAQLNPGSDDLGAGDELSFARL
MRKGNSTPGGEGADGEESEFTVKLLKEEGLKLTFSKHALMSNGSGGEGSGRRKRRDQELS
DPDGAVPVVNAMTGTVLSGERAPRRRDMPNWLKENPEYEVEGDMLELLVNRSKRKKKRTE
KAVALSGSEKINIIDMRTGKKVGAAHGPMLQDLREFLEENPDTAVAPEWAETARCSGFLP
DSLFHRLLSAHSVIPKRDRHHSHHHAPQPDPLEDPLLGGGEEETLVSDGAYMMEDEDLED
SSFLTQAFDVKMEGGDSLSQGGYESSDREALLDDVIMPQKDSDSSSSSED
NT seq
7713 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgatgatacgccgctgttcaacatggatgctctg
ccaggcgatgccttcacccagggttcctcagaccctgtggaggaggctctgaagctggct
ctggggcagattgaccccccctatgaacccaccccagctctctgcacaccagtcgcagct
ccaataatcccagacccagtccctgtgcagcagcaggcctccgtcccatttgccctccct
cagactgtttcaatcgcttcaacagtacctcagacaacactctctgtagccagtaacact
agtcgggctgccacagtcctgctgggctcacctctgactgtcaatagctctgctggcacc
acacaacagatcacaacacaacaattcaccacacagcagctcacacagatcgcacagcag
cttactcctcagcagctagctgccatcacccagcaggccggggggcagggaggctccaag
atcgtcatcctgaaaggacctggggggcatgcacaggtgctgcagactgttcctgggaca
ggctctcaagcggggaaggtcacctttgccagggtactgtctggaacccaacttaggcct
ggcatgcagatactgtctgggggaacggtcctgaaccaagcgtctcctgggcagggaccg
gtgaaggtggggactgggatacagaggctagttcagtcgcccaacggacccctgaaacag
gtgcagttgatctccatgccccagggccagacgcaaactgtccagatgcaaataccgcag
gcccagcttgcccaatcgcagcaaatccagctacaaccccagacacaggtgcagctgcag
tctaccatgcaaacacaggttaccgccactgctacaggcaccacttcagtacgaccacaa
ggggttaccctcactacagtaccacagcagggtgaagctaagaggattaccctggtgctg
cagcagccccatggtggcacgacccaggggggtgctgtgacggtgggtgggtcgggtcag
ctgcagcagggccagcagcagaggctggtgttgggtaacctcccagggaagctggtcctc
caagggggtcagctggctgctctcacccaggccagggcagggcagacgggggcgcagcct
aaagtacttaccatccagctgcaagtgcagcagcaacccaaccaacaggggggacccaag
tttcagctggtgtctggagggcaaggtagcagcccacaggtggttcagatctcccagggg
caaggtggacagagactggccatgcccctcaaactgctgctgcaaccacagatgagctcc
acctccacagcaggcggtaccgtctccgtagtgaaggtcatcaacacctcggctgctggc
tctgccccttccaccaccaccaccatggcatcaacagggatacggctagccaaggcccag
gagcctgtacggcgtgtggagaccctgggcaagcaggagaaggccaaccgcattgtggcc
gaggccattgccagagcaaaggcccggggagagaggaacattccacgagtcctcaaccag
gacgaactgcctccgggacagaaggctgctgacaaaggggctgctgcaacgaccactggc
acacctggagccaagaagaaggggggaggaggcgggagtaagaagaaaagcccaccaggg
gcgggggggaagggcatggcttgtgctgagaagaaaggcaaggccaaggcagcaggtgga
gctgctgtagggacacctgtaggggtggctggaaccagcggcagcaaaaacaaaagcaag
gcaaagatcaatacgatcactctagtggggggtaagaagaggaagaggaatgcatcctca
gaccactctgatggggacttgagccctgcctctccctctaaggccctggaggaggacatg
ttagcaaagaggcgctctaaccgtcaggtgaagaggaagaagtacacggaggacttggac
atcaaaatcactgacgacgaggatgagccggaggaggatgtggacgtaaccacgacggca
gcggtggcgtccattaccggaggggccgcggggcagctgatgggagagcagctcaaacag
gagctgcagttggacggggatggcctttccagcatgcagttctttgtggaaaaccccaac
gaggaagatgcagcaattgtcgacaaagtcttgtccatgaggctaactaagaaggaggtg
tctccaggacattatataaatgctgaggaattctttgtcaaatataagaactactcctat
atgcactgtgagtgggccactctggagcagctggagagagacaagaggatccaccagaag
ctgaagagattcaagatcaaacacgcacagatgagactcctcttacaggaggaggaggag
cccttcaacccagactatgtggaggtggaccggatcctggatgaatccaacagtgtggac
aaggacaatggagagccggtggtgtattacttggtgaagtggtgctctctgccctatgaa
gacgccacctgggagctgagggaggacgtggatgaggacaaggtggtggagtttaggaag
atccaggaccgccaacctcagctcaagagaacgccccgaccccaagcggctgcatggaag
aagctggaggaattcagagagtacaagagtgggaacgtacttcgagaataccagctagag
ggagtcaactggctgctcttcaactggtacaacaggcagaactgtatcctggctgatgag
atgggtctagggaagaccatccagtccatatctctgctgtctgaggtgcttggtgccggg
gtccaaggccccttcctggtcatcgcccccctctccaccatcaccaactgggagagggag
tttgccacctggactgacatgaatgccatcgtctaccacggcagcctggccagcaggcag
atgatccagcagtacgagatgtactgcaaggacgacaaggaccatctgatcccaggggca
tataaatttgaagccctgatcacgacttttgagatgattctgtccgactgccctgagctg
agggagatctcctggcgctgtgtgatcattgacgaagcccaccgcctcaagaaccgcaac
tgcaagctgctggacagcctcaagatgctggacctggagcataaggtgcttctgacaggc
actcccctccagaacacagtggaggagctcttcagtctgctgcactttcttgagccagct
cagttctcctcggagtccgagttcttacgtgactttggagacctcaaaaccgaggagcag
gtccagaagctccaagctattctgaagcctatgatgctgcgcagactcaaagaggatgtg
gagaagaacttggcgccaaaacaggagaccatcattgaggtggagctgacagatgtgcag
aagaaatactaccgggccatcctagagaggaactttagtttcctcagcatgggggcaacc
agcaacagcaacgtccccaatctgctcaacaccatgatggagctgcgcaagtgctgcaac
cacccctacctcatcacaggggcggaggagtctattgtggctgagctgagggaggtgtac
gaccccatggtgccagacttccacctgcaggccctggtgagatctgcaggcaagctggtc
ctgctggacaaactgctgcctcgcctgaaggccgggggacacaaggtgctcatcttctcc
cagatggtgcgctgcctggacatcctggaggactacctcatcaacaagagatacctgtac
gagcgtattgatggcagagtgagagggaacctgcgtcaggcagccattgatcgcttcagc
aaaccagactcggaccgtttcgtcttcctgttgtgtacccgggctggaggcctgggcatc
aacctgactgctgctgacacctgcgtcatctttgactcagactggaaccctcagaatgat
ctgcaggctcaggcgcggtgtcaccgtatcggccagtccaaggcggtgaaggtgtaccgt
ctgatcaccaggaactcctatgagagggagatgttggacaaggctagcctcaaactgggt
ctggaccgggctgtactgcagagcatgagtggcaacaaggagagcaacgtcaacggacaa
atccagcagttctctaagaaggagatcgaggacctcctgaggaagggggcgtacgctgcc
atcatggacgaggaggacgagggctccaagttctgcgaggaggacattgaccagattctc
cagaggagagcaaccaccatcaccattgagagcgagggcaagggctccaccttctccaag
gccagctttgtggccactgagaacaggaccgacatcgccctggacgaccccgagttctgg
cagaagtgggccaagagggcagacattgactttgattccatgaataggaagaacactctg
gtgattgacacacccagagtaaggaagcagacccgtcagttcgctaccctgaggggcgag
ggcggggagatctctgaccccgacagcgacgacgagtacccgcccgccaattcccggcag
tcccggtcctcaaggcgctccgagcgccacaccggaaatggctatggccgcaccgattgc
ttccgtgtggagaaacaccttcttgtttacgggtgggggcgctggcgggacatcctgtct
catgcacgctgtaagcggcgcctcggggagcgtgacgtggagaccatctgcagggtcatc
cttgtcttctgcctgctgcattaccgtggcgacgagaacatcaagagtttcatctgggag
ctcatcacccccccagagaatggccgggaaccacacacactcctcaaccactctggtctg
tccatccctgttcctcggggcaggaaggggaagagggtgaaggcccagagctcatttgac
gttcagaaggtggagtggatccgcaagtacaaccccgactccctgcttctggacgacagc
taccgcaaacatctcaagcaccagtgcaacaaggtgttgctgagagtgcgtatgctgtac
tacctgagacaggaagtcattggagaacacgccgattctgtgctgagaggagccgatgcc
agggatattgacatctggatgcctgagatggagcagcaggaggtgccatcaggctggtgg
gatacagaggcagaccgctccctcctcgtcggtgtcttcaaacacgggtatgagatgtac
accaccatgcgcgctgacgactgtctctgtttcctggagagagctggtcgccctgacgac
caggccattgatgcggagcagcactctgcagacgcagagctgggagacggaggagacgat
gacaagtattctgaagacccagagttcaagcctgcgtcaaggcacaccaaagacctgtac
gaggaggctgactccatgaacatgggtgacgatatctgtgtcgatgacaagccggggcct
gttaaaaccaagggaccgccttctggcctgtcaggagcctgtgagtggccgaccagctcg
tcacttaccgcgcggctccggcgtctgatcaccgcataccagcgcagctacaagagagag
cagctgaaggtggaggcagcagagaagggcgaccgcaagcgcaggaggtgtgagcaggcc
agtaagctgaaggagattgcacgccaggaacgccaacagaggtggacccgtagagaggag
tgtgatttctaccgtgtggtgtccacgtttggtgtcgagaggataaaagagccaactgcc
caagagggggaggatgctaaactggaatgggcccgcttccggaccttcgcccgtctggac
aagaagacggacgagagtctgagtcgctacttccgctgtttcatggccatgtgccggagg
gtgtgcaacctgcggcccgcccgcggagaagacccgtcagatttggggcagtctatggcc
cccatcaccgaggagcgggcatctcgcaccctgtaccgcatcagtctactgcgccgtctt
cgtgagcgtgtcctgccccacccctccatggaggagagcctgctgctggccccactcagc
tccgagcttcctgtctggtggagcactccggcccacgaccgggaactcatgctgggcgcc
gccctccacggtgtcagccgcaccgagctttcagtcttctccgacccgcagttctccttc
agtcaagcccgccacgactacctcgagatccagcagaaccagcccgcccctgccagtccc
ctccgccaaccacaggcagaggagggctccgccgtcaaggaggaggagggactgaacagg
gagtccggcctccttggagcttctgaggctctcggccactctgatacacagaccacaccc
ctctctcgccctgatgggaaggaacgtgaccgcaccggcttgggatggaagaagagcagg
gggaggggcccgagaagcggaggaaggaaaggcggaggaagtggagaaggagggatgtct
gatttggattcagactctgattcaggctcgtctacctcttcccggcgatcagaaagctct
gacgacagtgtggacagcgacgcagagagggagagagctgctctgaagatggaggaagat
ggagagaacagcttgctctcaatgactctatctcaagatggcgtgccaccggagtccctc
actgaccccttcagggttgactggcccaaggaccgtgtgttgataaaccgtctggacagc
ctctgtacactagtgctgtctgggcagtggccaacagggcggcgctacgcctctgacgcc
cagctcaatccaggctctgacgacctaggggcaggggatgagctcagctttgcacggctc
atgcggaaaggcaacagcacacccggtggagaaggagcagatggagaggaatctgagttc
acggtcaaactcctcaaggaggaggggctgaagctgaccttctctaagcatgccttgatg
tccaacgggtcagggggagaggggagcgggcgcaggaagcgtagggaccaagaattgtca
gatccagacggagcggtcccggtggtcaatgccatgacgggcacagtgctgagtggggag
cgggcccctcgacgcagggacatgcccaactggctgaaggagaacccagaatatgaggtg
gagggagacatgctggagctccttgtgaacagaagcaagaggaagaagaagaggacggag
aaggcagtagcgctgtcgggcagtgagaagattaacataattgatatgaggacaggaaag
aaggttggggctgcgcatggacctatgctgcaggatctgagggagtttctggaggagaat
cctgacactgcagttgcaccagaatgggctgagactgcccggtgctctggctttctgcca
gacagcctcttccaccggcttctctccgcacactctgtcattcccaagagagaccgtcac
cacagccaccaccacgctccccagcctgacccgctggaggacccactcctgggcggaggt
gaagaagagaccctggtctcagacggggcctacatgatggaggacgaagacttggaggat
tcttctttcctgactcaagcctttgatgttaagatggaaggcggcgatagcttgtcacaa
ggcggatacgagagttctgacagggaggcccttttggacgacgtcatcatgccgcagaag
gactcggactcttcctccagctcagaggattga
DBGET
integrated database retrieval system
