Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376420
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Entry
139376420 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139376420
Spliceosome [BR:
ocla03041
]
Complex C
Other components
Step II factors
139376420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
Flavi_DEAD
ABC_tran
nSTAND3
AAA_19
T2SSE
AAA_16
PRP38_assoc
TsaE
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
139376420
NCBI-ProteinID:
XP_070975098
LinkDB
All DBs
Position
20:45659135..45688407
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AA seq
1186 aa
AA seq
DB search
MADFGVEELKRLEYLSLVSKVCTELDNHLGICEKDLAEFVICLAEKQPTFDGFKSLLLKN
GADFTDSLISNLLRLIQTMRPSKASTSKASEPVVKQKSEKDKLKEMFPGLCRPDNPAPIP
LEDDDVRVADAAMKELEMFMPSVSGTNSTSRLDNKRQRSRSRSQDRDRKRRSRSPSCDRE
RDRDFKRGRKRVSRWSDRSPSPSRDRDIEVGSDRCKDKHMDRPPPEEPAVGDIFNGKVTS
ILQFGCFVQLEGLRKRWEGLVHISELRKEGRVANVADVVQKGQRVKIKVLSFTGSKTSLS
MKDVDQETGEDLNPNRRRNQGPDGGEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKI
SDLEKWEINQMIAANVLSKEEFPDFDEETGILPKIDDEEDQDLEIELVEEEPPFLRGHTK
QSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQRMAEMDCIPIGLNKHWVDPLP
DFDGRQIAANMRGIGMMPDGVPEWKKHAFGGNQASYGKKTVLSILEQRESLPIFKLKEQL
IQAVHDNQILIVVGETGSGKTTQITQYLAEAGYSARGKIGCTQPRRVAAMSVAKRVSEEY
GCCLGQEVGYTIRFEDCTSPETVIKYMTHGMLQRECLIDPDMGQYTIIMLDEAHERTIHT
DVLFGLLKKTVKKRPDMKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYCKEPET
DYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPEVPELIILPVYS
ALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTGVDQL
VVTPISQAQAKQRSGRAGRTGPGKCYRLFTERAYRDEMLTSNVPEIQRTNLASTMLSLKA
MGINDLLSFDFMDAPPMETMITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLI
MSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQQMADQKKAKFHQAEGDHLTLLAVYNSWKN
NKFSNPWCFENFIQARSLRRAQDIRKQMLGIMDRHKLDMVSCGKATVRIQKAICSGFFRN
AAKKDPQEGYRTLIDQQVVYIHPSSSLFNRQPEWLVYHELVLTTKEYMREVTTIDPRWLV
EFSPAFFKVADPTRLSKQKKMQRLEPLYNRYEEPNAWRISRAFRRK
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttggagttgaggagcttaagcggcttgaatacctgtctttggtgtccaaa
gtgtgtacagaacttgacaaccatcttggtatatgcgagaaagatcttgctgagtttgtc
atctgccttgctgaaaagcaaccaacatttgatggcttcaaatcacttctgctgaaaaat
ggagcagacttcactgattctctcatcagcaatttgctcagacttattcaaactatgcgg
ccgtcaaaagcatctacgagcaaagcctctgagcctgtggtcaaacagaagagtgagaag
gacaaactgaaggagatgtttcctggattgtgcaggccagacaatccagctcccattccg
ctagaagacgatgatgtgagggtagcagatgctgccatgaaagaattggagatgttcatg
cccagtgttagtggaacaaactcaacgagcaggttggacaacaaaaggcagcgaagcaga
agtcggagccaagacagagacaggaagagacgctcacgctctccgtcttgcgaccgtgag
agggacagagacttcaaacgcggtcgaaaacgtgtttcccgctggagtgatcgcagtccg
agcccctccagggatcgagacattgaggttggttctgaccgctgtaaggacaaacacatg
gaccggcccccaccagaagagcctgctgtaggggacatattcaacggcaaagtcaccagc
atcctgcagtttggctgcttcgtgcaactggagggactgaggaaacgctgggaggggttg
gtccacatctctgagctacgcaaagagggacgtgttgccaatgtggctgatgtggtccag
aaaggtcaacgagtcaagatcaaggtgctgtccttcactggctccaagaccagtctcagc
atgaaggatgtagaccaggaaacaggggaggacctgaacccgaacaggaggaggaaccag
ggccctgatggtggggaggagaaaatcatgaggaaccccgaccgcccaaccaacctcaac
ctgggccacgcccctgagttggaggatgacacactggagcgcaagagactgaccaagata
tctgaccttgagaagtgggagatcaaccagatgattgctgctaatgttctttctaaagag
gagttccccgactttgacgaggagacgggtatcctcccaaaaattgatgatgaagaagat
caggacctggagattgagctggtggaggaggagcctccgttcctgagaggacacactaaa
cagagtatggacatgagccctgtcaagattgttaagaatccagatggctcgctgtcccag
gcagccatgatgcagagtgctttggctaaggagaggagggaggtgaagcaggctcagcga
atggctgagatggactgcatacctattggcctcaacaagcactgggtagacccactgcct
gactttgatggaaggcagattgcagccaacatgagaggaatcggcatgatgccagacggc
gtcccggagtggaagaaacatgcctttggaggcaaccaggcctcttatggcaagaagaca
gtgctttccatcctggagcagagagagagcctgcccatcttcaagctcaaagagcagctc
atacaggctgtccacgataatcagatcctgattgtggttggggagactggctctgggaaa
actacccagatcacccagtacctggccgaggcgggctactccgctcgggggaagatcggc
tgcactcagccccgtcgtgtggcagccatgtccgtggccaagagagtctctgaagagtac
ggttgctgtctgggccaggaggtgggctacaccatccgttttgaggactgcaccagccct
gagacagtgatcaagtacatgacacatggtatgctgcagagggaatgtctgatagatccg
gacatgggtcagtacaccatcatcatgttagacgaggcccacgagaggaccatccatact
gacgtgctctttggtctgctcaagaagacagtgaagaagcgcccagacatgaagctgatt
gtgtcctcagcgacactagatgccgtcaagttctcccagtacttcttcgaggcgcccatc
tttaccatcccaggacgcactttcccagtggaggtgctctactgcaaagagcctgagacg
gactacctggacgccagtctcatcaccgtcatgcagatccacctgaccgagcctccaggt
gatgtcctggtgtttctgacgggtcaggaggagattgacaccgcttgtgagatcttgtat
gaacggatgaagtctctgggacctgaagtgcctgaactcatcattctacctgtctactct
gcgctgccaagcgagatgcagacccgtatctttgaccctgctccccccggcagcaggaag
gtaatcattgccactaacattgctgagacgtctctgactattgatgggatttactatgtg
gtggacccaggctttgtgaagcagaatgtctacaattccaagactggcgtcgaccaatta
gtggtgacccccatatcacaggcccaagccaagcagcgttctggtagggctggaagaact
ggccctgggaaatgctaccggctatttacagagagagcctacagagacgagatgctcacc
agcaatgtgcctgaaatccagagaacaaacctggccagtaccatgctgtctctcaaggcc
atgggcatcaatgacctgctatcgtttgatttcatggacgctccacccatggagacaatg
atcacagccatggagcagctctacactttaggggctctggatgatgaggggttgctcact
cgacttggacgcaggatggcggagttccctctggagcccatgctgtgtaagatgctgatc
atgtccgtccacctgggctgcagtgaggagatgctcaccattgtctccatgctgtctgtg
cagaacgtcttctacaggcccaaggacaagcagcagatggcagaccagaagaaggctaag
ttccaccaggccgagggagaccaccttactctgctggctgtctataactcctggaagaac
aacaagttctccaacccctggtgcttcgagaacttcatccaggcccgttccttgcgcaga
gcccaggatatccgcaaacagatgctgggtatcatggacaggcataaactggacatggtg
tcctgtggcaaggccacagtgcgcatacagaaggccatctgcagtggtttcttccggaac
gcagccaaaaaggatccccaggagggctaccgtacgctcattgaccagcaggtggtgtac
atccacccctccagttccctgttcaaccgccagcctgagtggttagtgtaccatgagttg
gtgctgactactaaggagtacatgagggaggtgaccaccattgacccacgctggctggta
gagttctcgccggcctttttcaaagtggccgatcccacgcgtctcagcaaacagaagaag
atgcagcgcctcgagcccctctacaaccgttacgaggagcccaacgcttggagaatctcc
cgtgcctttcgcaggaagtag
DBGET
integrated database retrieval system
